Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014090 [exp] 204 / 2e-67 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127900 [exp] 39 / 0.0004 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019824 pacid=23164006 polypeptide=Lus10019824 locus=Lus10019824.g ID=Lus10019824.BGIv1.0 annot-version=v1.0 ATGAACAGCACAGCAGCAGGAGGAGGAATGAACTTGGACATGTACCACAGCCTCATCTTCAGCAGCGGGGACTACTGGGGATTCGATCGTTTCGTCCCGA AAATGGAGAGTAGTAACGATCATGAAGATAAGCTGCATGGAGGGGTTGATGTTGGGATCGACGAGGATGATTTGCTGTATGCAGAGCTGAGCAGGCAGGT TCTGCTGCTGACTGCTGATGATGATGATGAACAAGATCGTTTCTTGACGGAGAAATACCATGGTGGTGGTGGTAATAATGGAGTTGGGAACTTGATGATG ATGAACTATGGTAATAATAGGAATGGTAATTTGGGTTTGGGAGGTGGAAATCAGTATTTCAACATGTGGGAGACTGAGTATTTAGCTAATGCTTCCTGCA ATTGGCCTGCTGCTGCTGGGAATTCTTCTTCATGGGGGAACTCTGTTAATAACATAGGAACTGGAGTCTTCATTCCTTATGTCGCCAACTCCAAGAGAAG GAACCGCAGAGGAAAGAAGAATGGGAAGAACAGAGCAAACAAGTTCGCTACAGAGAGCAAGCAACAATGGTGA
AA sequence Show only first row Show all	>Lus10019824 pacid=23164006 polypeptide=Lus10019824 locus=Lus10019824.g ID=Lus10019824.BGIv1.0 annot-version=v1.0 MNSTAAGGGMNLDMYHSLIFSSGDYWGFDRFVPKMESSNDHEDKLHGGVDVGIDEDDLLYAELSRQVLLLTADDDDEQDRFLTEKYHGGGGNNGVGNLMM MNYGNNRNGNLGLGGGNQYFNMWETEYLANASCNWPAAAGNSSSWGNSVNNIGTGVFIPYVANSKRRNRRGKKNGKNRANKFATESKQQW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019824 [exp]	0	1
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	8.6	0.7933
AT4G12140			RING/U-box superfamily protein...		Lus10007628 [exp]	12.6	0.7528
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10032010 [exp]	16.4	0.7834
AT1G29380			Carbohydrate-binding X8 domain...		Lus10025379 [exp]	20.3	0.7638
AT4G27570			UDP-Glycosyltransferase superf...		Lus10039236 [exp]	20.7	0.7682
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020730 [exp]	31.7	0.7375
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	33.2	0.7590
					Lus10010449 [exp]	33.7	0.7397
					Lus10018627 [exp]	34.7	0.7578
AT2G43610			Chitinase family protein (.1)		Lus10003586 [exp]	35.4	0.7538

Compare expression of checked genes

Lus10019824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.