Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34160 332 / 5e-112 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 265 / 7e-86 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 262 / 7e-85 CYCD3;3 CYCLIN D3;3 (.1) AT2G22490 150 / 7e-42 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT1G70210 146 / 1e-40 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 135 / 1e-36 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 124 / 9e-33 CYCD4;2 cyclin d4;2 (.1) AT4G37630 97 / 2e-22 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 97 / 3e-22 CYCD7;1 CYCLIN D7;1 (.1) AT4G03270 96 / 5e-22 CYCD6;1 Cyclin D6;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014089 [exp] 576 / 0 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 261 / 2e-84 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 259 / 1e-83 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10018739 [exp] 248 / 2e-79 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10027874 [exp] 250 / 8e-79 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10024796 [exp] 240 / 2e-76 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10002824 [exp] 190 / 9e-58 AT4G34160 142 / 7e-40 CYCLIN D3;1 (.1) Lus10010709 [exp] 152 / 1e-42 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10029194 [exp] 150 / 5e-42 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301800 [exp] 382 / 2e-131 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.009G097800 [exp] 365 / 3e-125 AT4G34160 331 / 3e-112 CYCLIN D3;1 (.1) Potri.005G141900 [exp] 336 / 1e-113 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.007G048300 [exp] 326 / 1e-109 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.002G123000 [exp] 288 / 1e-94 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 286 / 9e-94 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.005G157800 [exp] 155 / 4e-44 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.002G103500 [exp] 154 / 3e-43 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 147 / 5e-41 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 142 / 7e-39 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019825 pacid=23164092 polypeptide=Lus10019825 locus=Lus10019825.g ID=Lus10019825.BGIv1.0 annot-version=v1.0 ATGTCGCCGGCGGAACTCTCTGTTAACGACGGACCACCAATGCTCGACGACGATTCCCTTTACTGCGAGGAGGAAGAGAGATGGGACGACGACAGCGACG GCCAGGGAGAAGTTGTCGATTCCGACGACAACTCAAACTCACTCCCTCGTCTTTCTCCAATTCTGCTGCTGGAACAGGACTTGTTCTACGAAGACGACGA GCTACGCTCCCTCTTTGCCAAAGAGGAGAAGATCTCCGTTGCCGTCGTCTTCGACGGTGTCGTCTCATCGGCTCGCCGGCGGGCGGTGGAATGGATGGTG AAAGTCAATGCACGTTATGGGTTTTCGAATCTCACCGCCGTGTTAGCGATTAACTACCTAGATCGGTTCCTTGCGACTCCTTGTTACCAGAAGGAGAAGC CATGGATGATCCAGCTCGTGGCAGTCACTTGTCTCTCCCTGGCTGCTAAAGTGGAGGAAACCCACGTCCCTCTTCTTCTTGACCTTCAGGTTGAGGATAC AAAGTATGTATTTGAAGCGAAGACCATTCAAAGAATGGAGCTTCTAGTGCTGTCTGCACTTGGGTGGAAGATGCATCCAGTGACTCCGATCTCATTTGTG GATCACATTGTGAGGAGACTTGGACTGAAGAGCAATGTTCATTGGGAGTTCCTAACCAGATGCCATAGTTTCCTAGTCTGCTTAGTCTCCGATTCAAGAT CTGTCAGATATCAGCCATCAGTTCTGGCAACTGCAGCAATGATGCACGTTATTGACCAAGTTGAGCACTTTAACCCCATTGACTATCAGACGCAGCTACT CACTGTCCTCAACATCAGCAAGGAAAAGGTGAAGGAGTGTTATGAGGTGGTAACGGAGGTGGTGTCTGGAAAGTGCAATAGGAAGAAGAGAAAGTACTAC TATGAACAGGAAGAAGAAGAAGAAGACGAAGAGTTGTATCCAAGCAGCCCTAGCGGCGTGATTGATGCAGCTAATACCGATGCATTTAGCTGTGACAGCT CAAACGATTCTTGGGCAGTGGGAAATGGATCATTTTCATCCACTTCATCTCCCCATCCACCACTGCCATTAGGAGAGCAGCTAGAGCAGCAGCAGCAGCC ACTGGTAAAGAAGAGCAGAACACAAGATGACCAATGGGTTTGTGCTGGCCTCGTTGGGAGACCCAATTAG
AA sequence Show only first row Show all	>Lus10019825 pacid=23164092 polypeptide=Lus10019825 locus=Lus10019825.g ID=Lus10019825.BGIv1.0 annot-version=v1.0 MSPAELSVNDGPPMLDDDSLYCEEEERWDDDSDGQGEVVDSDDNSNSLPRLSPILLLEQDLFYEDDELRSLFAKEEKISVAVVFDGVVSSARRRAVEWMV KVNARYGFSNLTAVLAINYLDRFLATPCYQKEKPWMIQLVAVTCLSLAAKVEETHVPLLLDLQVEDTKYVFEAKTIQRMELLVLSALGWKMHPVTPISFV DHIVRRLGLKSNVHWEFLTRCHSFLVCLVSDSRSVRYQPSVLATAAMMHVIDQVEHFNPIDYQTQLLTVLNISKEKVKECYEVVTEVVSGKCNRKKRKYY YEQEEEEEDEELYPSSPSGVIDAANTDAFSCDSSNDSWAVGNGSFSSTSSPHPPLPLGEQLEQQQQPLVKKSRTQDDQWVCAGLVGRPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10019825 [exp]	0	1
AT3G53540			unknown protein		Lus10024434 [exp]	1.4	0.8383
AT5G66770	GRAS		GRAS family transcription fact...		Lus10041740 [exp]	3.0	0.8405
AT3G55390			Uncharacterised protein family...		Lus10005154 [exp]	4.8	0.7424
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	9.6	0.8086
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	11.2	0.7838
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	12.6	0.8129
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	16.7	0.7769
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	20.8	0.7800
AT1G16520			unknown protein		Lus10031193 [exp]	21.9	0.7745
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	22.4	0.8022

Compare expression of checked genes

Lus10019825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.