Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34150 186 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G55470 59 / 2e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G63220 56 / 2e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G05500 49 / 3e-06 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G07940 48 / 5e-06 Calcium-dependent ARF-type GTPase activating protein family (.1) AT5G47710 45 / 2e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G03370 43 / 0.0002 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014088 [exp] 345 / 9e-119 AT4G34150 202 / 4e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027875 [exp] 229 / 4e-74 AT4G34150 246 / 3e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002825 [exp] 218 / 9e-70 AT4G34150 243 / 5e-81 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002235 [exp] 63 / 5e-12 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10029565 [exp] 62 / 1e-11 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040291 [exp] 56 / 3e-09 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10016347 [exp] 53 / 3e-07 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10002760 [exp] 52 / 5e-07 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 49 / 3e-06 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301900 [exp] 215 / 8e-69 AT4G34150 204 / 8e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G097900 [exp] 202 / 1e-63 AT4G34150 213 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G123200 [exp] 176 / 2e-53 AT4G34150 185 / 3e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G155600 [exp] 64 / 2e-12 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203000 [exp] 57 / 1e-09 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.T125706 [exp] 49 / 4e-06 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.003G198301 [exp] 49 / 4e-06 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.006G063900 [exp] 47 / 1e-05 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 47 / 1e-05 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 44 / 0.0001 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10019826 pacid=23163984 polypeptide=Lus10019826 locus=Lus10019826.g ID=Lus10019826.BGIv1.0 annot-version=v1.0 ATGTCGTTTGCTTCTGGGATTCAAGGCCAGCTCCTTGAAGTCACCGTTGTCGGGTGCACGAAATTGAAGGACACGGAATGGATATCGAGGCAGGACCCTT ACGTCTGTGTTGAATACGGCAGTAACAAGTCCCGGACTAGAACTTGCACTGATGGAGGGAAAAACCCTACGTTTCAAGAGAAGTTCGTCTTCACTCTGAT TGAAGGTCTGAGGGAATTGATTGTTGTTGTTTGGAACAGTAACACGGTGAAGTTTGACGACTTCATTGGCACTGGCAAAGTTCAATTGCAGAAGGTTCTT GCAGAGGGATATGATGATACAGCCTGGCCACTTAAAACGAAAACTGGCAGGTATTTGTTGAGATGTCTTGTTGGGTTTGATTCAGATTGCACCATTGGGT GCTGGAATTTCAAAAGAACAATGGCAATTGGGTTTGTTTATGAAGGATGGACTGTGATAAAGTCTGCCGGGTGTCTCTCTAATCCAACAGCAGGACTTTG CTTGAGAATCCACTCAAAAAACAAGTCAAAGCATGCTGGTGAAGTTCGGCTCATAATGCACTATGCCAATGCCAAAAAACCAACTGGAAGTCACTCTCAC TCAGCACCACCGCACGGAGCATACGCTCCCCATGCCTCGATGTACTCGGCACCACCACAATCAGCATACGCACCGCCTCCTACTGCACCAGGTTACTCTA ACACTCCCCCAAGTGCAGCCTATCCGTCATATCCCCACTCTTCATATCCGCAACAGCATCCACCATATGCACCATCCCCATATCCTTCGATGCCAAATGC TTATCCTCAATCATCTTATCCACCTCATTCGGCTTATCCTCCTCCATCATCATCACCCTATCCACCTCCTCCACACGGTTCACCTTACCCTCCTCCAGGT AATGCCGCGTTCTTAACCAGTACCTCCGAATTCATTACTTCTCGGCGTATAAAATCTTTGTACGCTAACGTAATGGTCGTTATCTTTTTCGTTTTGTAG
AA sequence Show only first row Show all	>Lus10019826 pacid=23163984 polypeptide=Lus10019826 locus=Lus10019826.g ID=Lus10019826.BGIv1.0 annot-version=v1.0 MSFASGIQGQLLEVTVVGCTKLKDTEWISRQDPYVCVEYGSNKSRTRTCTDGGKNPTFQEKFVFTLIEGLRELIVVVWNSNTVKFDDFIGTGKVQLQKVL AEGYDDTAWPLKTKTGRYLLRCLVGFDSDCTIGCWNFKRTMAIGFVYEGWTVIKSAGCLSNPTAGLCLRIHSKNKSKHAGEVRLIMHYANAKKPTGSHSH SAPPHGAYAPHASMYSAPPQSAYAPPPTAPGYSNTPPSAAYPSYPHSSYPQQHPPYAPSPYPSMPNAYPQSSYPPHSAYPPPSSSPYPPPPHGSPYPPPG NAAFLTSTSEFITSRRIKSLYANVMVVIFFVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34150			Calcium-dependent lipid-bindin...		Lus10019826 [exp]	0	1
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	5.9	0.8561
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015517 [exp]	11.4	0.8625
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10000504 [exp]	17.3	0.8357
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	20.1	0.8368
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	20.4	0.8562
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	22.7	0.8573
AT2G45670			calcineurin B subunit-related ...		Lus10036544 [exp]	23.8	0.8391
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10022606 [exp]	29.1	0.8568
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	29.3	0.8307
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10002578 [exp]	30.2	0.8531

Compare expression of checked genes

Lus10019826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.