Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43060 488 / 2e-172 Granulin repeat cysteine protease family protein (.1) AT1G47128 473 / 1e-166 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 464 / 6e-163 Granulin repeat cysteine protease family protein (.1) AT4G36880 361 / 8e-124 CP1 cysteine proteinase1 (.1) AT1G09850 350 / 2e-118 XBCP3 xylem bark cysteine peptidase 3 (.1) AT3G19400 322 / 1e-108 Cysteine proteinases superfamily protein (.1.2) AT5G50260 320 / 9e-108 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 316 / 2e-106 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT4G35350 316 / 3e-106 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 301 / 2e-100 XCP2 xylem cysteine peptidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014087 [exp] 656 / 0 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 583 / 0 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 583 / 0 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10024801 [exp] 471 / 9e-166 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 339 / 3e-114 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10018735 [exp] 330 / 9e-111 AT1G47128 491 / 3e-172 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10018083 [exp] 315 / 7e-106 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042078 [exp] 313 / 6e-105 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10013674 [exp] 311 / 4e-104 AT5G50260 554 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302100 [exp] 545 / 0 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 536 / 0 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 480 / 3e-169 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 357 / 6e-122 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G232900 [exp] 347 / 2e-117 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.005G141600 [exp] 344 / 4e-117 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.012G090900 [exp] 321 / 4e-108 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087400 [exp] 318 / 5e-107 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.004G207600 [exp] 315 / 3e-106 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.015G087500 [exp] 314 / 2e-105 AT5G50260 530 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF00396 [flax] [poplar] Granulin Granulin
Representative CDS sequence Show only first row Show all	>Lus10019827 pacid=23164032 polypeptide=Lus10019827 locus=Lus10019827.g ID=Lus10019827.BGIv1.0 annot-version=v1.0 ATGGACAGGTCGAAGAAGGTCAACAGTTCTTCTTCGTCGCCGGCGGTTGGCGAGAGGTATTTGTTTAAGAAGGGCGATGACTTGCCGGCTAGCGTCGATT GGCGCGAGAAAGGAGCTGTTGCCCCGGTCAAAGATCAAGGACAGTGCGGGAGCTGCTGGGCTTTCTCAACTGTGGGAGCTGTAGAAGGAATCAACCAAAT TGTTACTGGTGAGATGATTTCACTGTCTGAACAGGAGCTTGTGGATTGCGATACCTCATATAACCAAGGTTGCAATGGAGGTCTCATGGACTATGCATTT GAGTTCATCATGAAGAATGGCGGTATTGATACCGAAGATGATTACCCTTACAAGGCTGCTGATGATGTCTGTGATTCCAACAGGAAAAATGCCAAGGTTG TTATCATTGATGGGTACGAGGATGTTCCACAAAACGACGAGAGTTCCCTGAAGAAGGCTGTGGCAGGTCAGCCAGTCAGTGTCGCCATTGAAGCTGGTGG CAGGGCGTTCCAGCTCTACCAGTCGGGTGTTTTCACTGGTCAATGCGGGACACAACTCGACCATGGTGTCGTTGCAGTTGGATACGGGACTGAGAATGGT GTCGACTACTGGATCGTGAGGAACTCGTGGGGACCAGAGTGGGGAGAGAAAGGGTACATCAAGATGGAGCGTAATGTTGCCAAGACCAAGACAGGGAAGT GTGGAATTGCGATGCAAGCTTCATACCCAACCAAGAAGGGACCAAACCCTCCTAACCCAGGTCCAACTCCACCAACCCCGGCTACTCCCCCACCTCCACC GAGCCCTGGATCTGTATGCGACGACTACTACTCATGTCCCGCAAGCACCACTTGCTGCTGCATTTATCAATACGATAACTACTGCTTTGGATGGGGATGC TGCCCTCTCGAATCTGCAACTTGCTGCGATGACCACTACAGTTGCTGCCCTCATGACTATCCAGTCTGTGACCTCAACGCTGGAACCTGCAGAATGAGCA AGGAGAATCCGTTTGGAGTGGCGACGATGAAGCGATTCCTGGCTAAAAGCACTAGGCCTCAGTTGCAGAGGGTGGTTGTTACCGCCGCTTGA
AA sequence Show only first row Show all	>Lus10019827 pacid=23164032 polypeptide=Lus10019827 locus=Lus10019827.g ID=Lus10019827.BGIv1.0 annot-version=v1.0 MDRSKKVNSSSSSPAVGERYLFKKGDDLPASVDWREKGAVAPVKDQGQCGSCWAFSTVGAVEGINQIVTGEMISLSEQELVDCDTSYNQGCNGGLMDYAF EFIMKNGGIDTEDDYPYKAADDVCDSNRKNAKVVIIDGYEDVPQNDESSLKKAVAGQPVSVAIEAGGRAFQLYQSGVFTGQCGTQLDHGVVAVGYGTENG VDYWIVRNSWGPEWGEKGYIKMERNVAKTKTGKCGIAMQASYPTKKGPNPPNPGPTPPTPATPPPPPSPGSVCDDYYSCPASTTCCCIYQYDNYCFGWGC CPLESATCCDDHYSCCPHDYPVCDLNAGTCRMSKENPFGVATMKRFLAKSTRPQLQRVVVTAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43060			Granulin repeat cysteine prote...		Lus10019827 [exp]	0	1
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10019828 [exp]	4.2	0.8283
AT5G45030			Trypsin family protein (.1.2)		Lus10031205 [exp]	4.8	0.8506
AT2G17990			unknown protein		Lus10028465 [exp]	7.3	0.8108
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	18.1	0.8472
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10006587 [exp]	20.6	0.7918
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10036919 [exp]	25.3	0.7842
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	29.7	0.8319
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	33.3	0.8370
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019020 [exp]	37.1	0.8186
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10025191 [exp]	48.0	0.7368

Compare expression of checked genes

Lus10019827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.