Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49750 327 / 6e-109 Leucine-rich repeat (LRR) family protein (.1) AT3G19320 310 / 3e-102 Leucine-rich repeat (LRR) family protein (.1) AT4G06744 263 / 5e-85 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 221 / 6e-66 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 219 / 3e-65 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 211 / 6e-64 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 209 / 4e-61 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT3G19020 210 / 9e-61 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 204 / 3e-59 LRX1 leucine-rich repeat/extensin 1 (.1) AT1G62440 202 / 3e-58 LRX2 leucine-rich repeat/extensin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027878 [exp] 427 / 9e-148 AT3G19320 408 / 2e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10002828 [exp] 417 / 3e-146 AT3G19320 372 / 1e-126 Leucine-rich repeat (LRR) family protein (.1) Lus10014085 [exp] 345 / 3e-120 AT1G49750 224 / 2e-71 Leucine-rich repeat (LRR) family protein (.1) Lus10010049 [exp] 224 / 1e-69 AT4G06744 442 / 2e-154 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 211 / 6e-62 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 202 / 9e-61 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 199 / 2e-60 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 191 / 5e-57 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 194 / 7e-56 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098601 [exp] 379 / 1e-128 AT3G19320 421 / 5e-143 Leucine-rich repeat (LRR) family protein (.1) Potri.001G302500 [exp] 289 / 5e-95 AT4G06744 411 / 5e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098700 [exp] 275 / 2e-89 AT4G06744 405 / 9e-140 Leucine-rich repeat (LRR) family protein (.1) Potri.014G024300 [exp] 264 / 5e-85 AT4G06744 449 / 6e-157 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 214 / 9e-66 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 218 / 7e-64 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 208 / 5e-62 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 213 / 1e-61 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 204 / 1e-60 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 199 / 5e-60 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019830 pacid=23163951 polypeptide=Lus10019830 locus=Lus10019830.g ID=Lus10019830.BGIv1.0 annot-version=v1.0 ATGAAAATCAAGTACGATCCGTTCAACATTGTGAAATCATGGAAGGGGCCTAACGTATGCAATTACAAAGGATTCAGATGCGCGGTGCGTCCGGATGTAA AGAAGAGAGCAGTCGCGGTGGCGGATTTCAACGGTTACAATTTCGGAGGAGGGGACGACGACCTTGAGTTGCCGGGATTCCTGGATGAGTTGACCGATTT GACATTCTTCCACGCGAATTCGAACAATTTTACCGGGTCGATCCCGGGGCATCTCGGATCGAGGATCAAGTTCTTCTACGAGATAGATCTCAGCAACAAT AAATTCGCTGGTAAGTTCCCGAAGCATATCCTTTCGGCCAGGAATGCTAGCTACATCGACATCCGATACAACTCCTTCTCTGGTCAGCTACCGGCAGAGG TCTTCAATCACGAGACGGACGTGCTGTTTCTCAACAACAACGGATTCACCGGTCCGCTCCCCGAGAATATCGGCGATTATCCCGCAATGTACTTGACATT CGCTAACAACCGATTCTCAGGCCAGATCCCGAGGAGCATCGGGAGGTGCGAGAACCTTCTCGAAGTGCTGCTCCTCAACAACCGATTATCGGGATGTTTG CCGACGGAGATAGGGAATCTGACCAAGGCGAGGATATTCGACGCCGGAAATAACAAACTCACCGGTCCGATTCCCCACTCGTTTGCTTGCCTGGCGGAGA TGCGAGATCTGAATCTGGCTCGGAACAAGCTGTACGGCGCTGTGCCGGAGAGCGTGTGTCAGCTGCCGAAGCTCACGAATCTGTCGCTGTCGTCGAACTA CTTGACGCAGGTGGGGCCCGCCTGCAGAAAGCTGATCGATAGAAAGGTCCTGGATGTGAAGGATAACTGTATTCTGGATCTGCCGGGTCAGAAATCGGCG GAGGAATGCGGCAAGTTTTTCTCCGGGAGAACTAACTGCCCAAACGTGAAGACATTGATGAGCTACATCCCCTGCAAGAAAGGGGAGAATTCCGATCGGA AATTGACGGCGGTGGACGAAGAATCGTTGCCGGCTCCGGTGTCGTTCGCGTATCTTGCGTTGAAGCCTCACAAGTTGAGATGA
AA sequence Show only first row Show all	>Lus10019830 pacid=23163951 polypeptide=Lus10019830 locus=Lus10019830.g ID=Lus10019830.BGIv1.0 annot-version=v1.0 MKIKYDPFNIVKSWKGPNVCNYKGFRCAVRPDVKKRAVAVADFNGYNFGGGDDDLELPGFLDELTDLTFFHANSNNFTGSIPGHLGSRIKFFYEIDLSNN KFAGKFPKHILSARNASYIDIRYNSFSGQLPAEVFNHETDVLFLNNNGFTGPLPENIGDYPAMYLTFANNRFSGQIPRSIGRCENLLEVLLLNNRLSGCL PTEIGNLTKARIFDAGNNKLTGPIPHSFACLAEMRDLNLARNKLYGAVPESVCQLPKLTNLSLSSNYLTQVGPACRKLIDRKVLDVKDNCILDLPGQKSA EECGKFFSGRTNCPNVKTLMSYIPCKKGENSDRKLTAVDEESLPAPVSFAYLALKPHKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	0	1
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	1.7	0.9375
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	2.0	0.9197
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	3.9	0.8790
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	5.5	0.9025
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	7.5	0.9196
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	8.2	0.9095
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	10.0	0.8844
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	10.8	0.8805
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10001833 [exp]	11.8	0.8803
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10014731 [exp]	12.1	0.8736

Compare expression of checked genes

Lus10019830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.