Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 417 / 1e-142 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34131 402 / 5e-137 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G15480 402 / 8e-137 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34138 390 / 3e-132 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT4G34135 390 / 4e-132 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G36780 343 / 1e-113 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 342 / 2e-113 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 339 / 6e-112 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36750 333 / 1e-109 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36790 329 / 3e-108 UGT73C6 UDP-glucosyl transferase 73C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014084 [exp] 863 / 0 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019832 [exp] 606 / 0 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 598 / 0 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014086 [exp] 595 / 0 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014079 [exp] 400 / 7e-136 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10014082 [exp] 396 / 1e-134 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019835 [exp] 393 / 4e-133 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10019833 [exp] 391 / 1e-132 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10010239 [exp] 389 / 3e-131 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098400 [exp] 523 / 0 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 506 / 2e-177 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 490 / 2e-171 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 458 / 9e-159 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 457 / 2e-158 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 455 / 1e-157 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 454 / 3e-157 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 449 / 2e-155 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 445 / 1e-153 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.002G123700 [exp] 398 / 5e-135 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10019831 pacid=23164033 polypeptide=Lus10019831 locus=Lus10019831.g ID=Lus10019831.BGIv1.0 annot-version=v1.0 ATGGCTCACGGCCATATGATCCCACTCCTTGACATGGCTCGCCATTTCGCCCGCCACGGTGCCAAATCCACCATCATCACCACCCCACTCAACGCCCCAA CTTTCTCCGACAAGATAACGCGAGACGCCCGACTGGGTCTCCAGATCCAAACCCACATCATCGAATTCGACCCTGTCCTGACCGGCCTGCCAAAGGGCTG CGAGAACGTTAACTCGATCGAGTCCCCCGACATGCTCTTTGCGTTCTTCAAGTCCATGGATGCATTCCAAGCCCCGGTACGCGATCTCCTCGTGAAATGG CGACCCGATGCAATCGTGGCCGATTTCGCGTTCCACTGGGCCACCGAGACCGCCCACGGTTTGGGGATCCCAAGGCTGTTCTTCAACGGGATGGGGTCTT TTGCGACGTGTCTGTTCGAACGTCTTAAAGAGAGCGACCAGTACAAAAAAGTGGAGTCCGAATCCGACCCATTCTTCATGGATATCGGGATTTCGAACCG GTTTCGATTCACCAAAATGCAGCTCCCACCTTGCTTGAAAGGGGAAGAGGTGGAGAGCCGGTTGGTTGAGTTTCGAGATAGAATCGAGGAATCGGAGGCT AAAAGCTACGGAGTTGTCGTGAATAGCTTCCATGAGCTCGAGGCAGAGTATGCAGAGTACTACAGGAATGTGATTGGAAGAAAGGCATGGTTCGTTGGTC CAGTTTCACTTATTGACAATAATAATGTTATGGATCAAGCAGCCATTGATGGAGGCAAATGTTTGAAATGGCTCGACTCGAAAAAACCGAATTCTGTTAT CTACATATGCTTTGGGAGCATCTCCACCATGTCTGATGCTCAGCTGGTGGAGATTGCTGCAGCGATCGAGGCATCGGGGCATGGATTCATCTGGGTAGTG AAGAAGCAAGACCGGCTGCCTGAAGGGTTTGAGAAGAGAATGGAAGGGAAAGGGTTGGTAGTTAGAGGATGGGCGCCTCAGGTGGTGATACTTGATCATG AAGCCGTTGGTGGGTTCATGACGCATTGTGGATGGAACTCGACGATGGAAAGTGTGGCTGCAGGGGTACCGATGGTGACATGGCCGATCCAGGCGGAGCA GTTTTTGAACGAAAAGTTGGTAACCGATGTTTTGAGGATCGGGGTTGGAGTTGGGGCTCAGGAGTGGTCGAGGAAGGAGAGGAGGATCGTGTTGGGGAGG GAGGAGATCGGGAAGGCGGTGAGGGAGGTGATGGTCGGTGAAGATGTTCGAAAGATGAGAATGAGAGCTGCCGAGCTTAAGGAATCGGCTAAGAGGGCTG ATGAAGAAGGTGGATCATCTCACTGTGACTTGAAGTCGCTATTGGAAGAATTGAGTTCTCTCAAAGGTAAAATAAATTGA
AA sequence Show only first row Show all	>Lus10019831 pacid=23164033 polypeptide=Lus10019831 locus=Lus10019831.g ID=Lus10019831.BGIv1.0 annot-version=v1.0 MAHGHMIPLLDMARHFARHGAKSTIITTPLNAPTFSDKITRDARLGLQIQTHIIEFDPVLTGLPKGCENVNSIESPDMLFAFFKSMDAFQAPVRDLLVKW RPDAIVADFAFHWATETAHGLGIPRLFFNGMGSFATCLFERLKESDQYKKVESESDPFFMDIGISNRFRFTKMQLPPCLKGEEVESRLVEFRDRIEESEA KSYGVVVNSFHELEAEYAEYYRNVIGRKAWFVGPVSLIDNNNVMDQAAIDGGKCLKWLDSKKPNSVIYICFGSISTMSDAQLVEIAAAIEASGHGFIWVV KKQDRLPEGFEKRMEGKGLVVRGWAPQVVILDHEAVGGFMTHCGWNSTMESVAAGVPMVTWPIQAEQFLNEKLVTDVLRIGVGVGAQEWSRKERRIVLGR EEIGKAVREVMVGEDVRKMRMRAAELKESAKRADEEGGSSHCDLKSLLEELSSLKGKIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019831 [exp]	0	1
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	6.4	0.7854
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	7.9	0.7777
AT5G03260		LAC11	laccase 11 (.1)		Lus10013800 [exp]	14.5	0.7321
					Lus10014061 [exp]	16.1	0.7105
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	17.5	0.7453
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	20.8	0.7290
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	22.6	0.7376
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	24.1	0.7271
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014084 [exp]	24.5	0.6807
AT1G69550			disease resistance protein (TI...		Lus10024150 [exp]	25.9	0.6363

Compare expression of checked genes

Lus10019831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.