Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 438 / 2e-150 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34131 435 / 4e-149 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 433 / 2e-148 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G15480 422 / 3e-144 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34138 402 / 3e-136 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36790 355 / 1e-117 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G36780 355 / 1e-117 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 353 / 7e-117 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36770 351 / 3e-116 UDP-Glycosyltransferase superfamily protein (.1) AT3G53150 351 / 4e-116 UGT73D1 UDP-glucosyl transferase 73D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014083 [exp] 868 / 0 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014086 [exp] 734 / 0 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014084 [exp] 585 / 0 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 568 / 0 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019835 [exp] 406 / 1e-137 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10014079 [exp] 405 / 2e-137 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019833 [exp] 399 / 3e-135 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 398 / 6e-135 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10010239 [exp] 380 / 5e-127 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098400 [exp] 555 / 0 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 547 / 0 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 524 / 0 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 494 / 2e-172 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 493 / 8e-172 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 488 / 6e-170 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 476 / 4e-165 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 474 / 2e-164 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G099032 [exp] 473 / 6e-164 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.002G123700 [exp] 418 / 3e-142 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10019832 pacid=23163956 polypeptide=Lus10019832 locus=Lus10019832.g ID=Lus10019832.BGIv1.0 annot-version=v1.0 ATGGAGTCAAAGCAGCTCCATGCAGTCTTCTTCCCATTCATGGCTCAGGGCCACATGATCCCACTCGTTGACATGGCACGCCTATTCGCCCGCCGTGGCG CCAAATCCACCATCGTCACTACTCCACTCAACGCCCCGCTCTTTTCTGACAAGATCAAACGAGAGACACAACAAGGTCTCCAAATCCAAACCCATGTCAT CGATTTCCCTTTCCTCGAGGCCGGATTACCAGAAGGCTGCGAGAACGTCACCTCACTCAAGTCCCCTGCCATGATCTTCCAATTCTTCTTATCCATGCAC GTTTTTAAGCAACCGATTGAGGAGCTCCTCAAACTATGGAAACCGGACTGCATCGTTGCGGACGTGGTCTTCCACTGGGCGACCGAATCAGCCCACAGAC TCGGCATCCCGAGGCTGTTCTTCAACGGGACAGGCTCCTTCTCAATGTGTTTGATCGATTGTTTCAAACGCTACGACCCTTGCAAAGGTGTCGAATCTGA TTCGGAGCCGGTCGTTTTGCCTGGTTTACCGCACAAGATTGAATTCAAGAAGTCGCAGCTTCCTCCTTTCTGGAAAGGTGAGAAGGTGGATGACAAAATA GAAGAACTCAGACATCTGATTGACAAATCAGAGGAGGAGAGTTTCGGGGCTGTGGTGAATAGCTTCCATGAGCTCGAGCCTGGCTACTCAGAGCACTACA GGGAGGTGATCGGAAGGAAGGCATGGTTCGTCGGTCCATTGTCGGTTTGTAACAAGGACACTACTCTGGACAAAGCAGATAGAGGAGATGCTGCAGCCAT TGATGGACGTCAATGTCTGAGATGGCTAGACGGTAGAGTACCAAATTCAGTTCTCTACATTTGCTTTGGGAGCATATCCGGTCTTCCGGATGCTCAGCTG TTGGAGATTGCTGCAGCTCTCGAGGCATCAGGGCAGAGCTTCATTTGGGTGGTGAAGAAGGGAGCTAAAGGGATCAGTACTGAAGAGGAAAAAGAAGAAT GGCTGCCGAAAGGGTTCGAGGAAAGGATGGAAGGGAAAGGGTTGATCATTAGGGGATGGGCGCCACAGGTGCTGATACTTGATCATCTAGCAACAGGTGG GTTCATGACTCACTGCGGATGGAACTCCACGCTCGAAGGTGTGGCTGCAGGTGTTCCAATGGTAACATGGCCGCTACAGGCAGAGCAGTTCTTGAACGAG AAGCTGGTGACAGATGTTCTGAGGGTCGGGGTTGGTGTTGGGTCACAGGAATGGTCGAGGGGCGAGTGGAAAACCGTTGTGGGTAGGGAAGACATAGAGA GAGCAGTGAGACAAGTAATGGTTGGTGAACATGCTGAAGAAATGAGAGAGCGAGCAATGGAGCTTAAGGAAAAGGCTGTAAAGGCTAATGAAGAAGGTGG ATCGTCTTACACTGATTTGAAATCGTTGTTGGAGGAGCTTGCATCTGTACGAGAGAAGAAGGATGTTGATTTCTCCAGCTTGAAACTGTAA
AA sequence Show only first row Show all	>Lus10019832 pacid=23163956 polypeptide=Lus10019832 locus=Lus10019832.g ID=Lus10019832.BGIv1.0 annot-version=v1.0 MESKQLHAVFFPFMAQGHMIPLVDMARLFARRGAKSTIVTTPLNAPLFSDKIKRETQQGLQIQTHVIDFPFLEAGLPEGCENVTSLKSPAMIFQFFLSMH VFKQPIEELLKLWKPDCIVADVVFHWATESAHRLGIPRLFFNGTGSFSMCLIDCFKRYDPCKGVESDSEPVVLPGLPHKIEFKKSQLPPFWKGEKVDDKI EELRHLIDKSEEESFGAVVNSFHELEPGYSEHYREVIGRKAWFVGPLSVCNKDTTLDKADRGDAAAIDGRQCLRWLDGRVPNSVLYICFGSISGLPDAQL LEIAAALEASGQSFIWVVKKGAKGISTEEEKEEWLPKGFEERMEGKGLIIRGWAPQVLILDHLATGGFMTHCGWNSTLEGVAAGVPMVTWPLQAEQFLNE KLVTDVLRVGVGVGSQEWSRGEWKTVVGREDIERAVRQVMVGEHAEEMRERAMELKEKAVKANEEGGSSYTDLKSLLEELASVREKKDVDFSSLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	0	1
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	1.0	0.9859
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	2.0	0.9801
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	4.0	0.9772
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	4.9	0.9799
AT4G35110			Arabidopsis phospholipase-like...		Lus10007582 [exp]	5.7	0.9659
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	8.1	0.9738
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	9.7	0.9750
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	10.8	0.9732
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	11.0	0.9722
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	12.7	0.9692

Compare expression of checked genes

Lus10019832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.