Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15480 473 / 3e-164 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 467 / 4e-162 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34131 445 / 2e-153 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 440 / 2e-151 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT4G34138 430 / 1e-147 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36780 374 / 1e-125 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 374 / 1e-125 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 360 / 3e-120 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36750 359 / 7e-120 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36760 354 / 8e-118 UGT73C2 UDP-glucosyl transferase 73C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014082 [exp] 809 / 0 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019835 [exp] 488 / 3e-170 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10014079 [exp] 472 / 3e-164 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10014083 [exp] 440 / 3e-151 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10019832 [exp] 440 / 3e-151 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014086 [exp] 428 / 8e-147 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014084 [exp] 401 / 2e-136 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 393 / 2e-133 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10010239 [exp] 369 / 2e-123 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099032 [exp] 569 / 0 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 548 / 0 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 545 / 0 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 540 / 0 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 535 / 0 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 531 / 0 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G302400 [exp] 491 / 1e-171 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 483 / 1e-168 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.009G098400 [exp] 475 / 3e-165 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.002G123700 [exp] 419 / 6e-143 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10019833 pacid=23164037 polypeptide=Lus10019833 locus=Lus10019833.g ID=Lus10019833.BGIv1.0 annot-version=v1.0 ATGGCCAAGATCTTCGCCTCTCGTGGCGTCAAGGTTACCATCGTCACCACCCCTCTTAATGTTCCGTTCTTCTCCAAGACGATCAGCAAGCACTCTGAGT CCACCGGATCCGAGATTCGGATTCAAACCCTCAAATTCCCGACAACCGAGTTCGGGCTACCGGAAGGATGCGAGAACGCCGAGGTCATCACTTCCATGAA CTTGGGGTGGGAGACCTTCTCCAAGTTCTTCCTGGCCTCCACCAAACTTCAGGAATCCTTGGAGAAGCTTCTGGAAGAGGACCGTCCCGATTGTCTCGTG GCCGATATGTTCTTCCCCTGGGCAACTGACTCTTCCGAAAAGTTCGGGATCCCGAGGCTTTTGTTTCATGGTACAAGCTTCTTCTCTTTAACTGTCATGG ACGTTCTGTCTAGGTATGAGCCGCATAAGGATGTCTCATCGGATACAGAGCCGTTCGAGGTTCCCGGCGGACTCCCGGACAAGATCATGTTGACTAAGCG TCAGCTGCCGGCATCGGCAGTAGCAACGGGACAGGGAGACACCTTCATGTGGGAGTTCTTCAAAAAAGTGAGGGAGTCAAACTCTCAAGGTTATGGTACA GTGGTCAACAGCTTTTACGAGCTTGAACCAGGATATGTTGACTATTATAGGAATGTGTTCCAAAGGAAAGCTTGGCACATTGGTCCTGTCTCGCTGTGCA ATGCTGACGTTGATGATAAAGCTAACCGAGGGAAGGAATCTTCGATTGACTGGGACTACTGTCTTAACTGGCTAGACTCGAAGGAACCGAAGTCCGTTGT TTATATATGCTTCGGTAGCGTAGCAAACTTCAGTGCGGAACAGCTTAAAGAGATTGCAATCGGGATTGAAGCTTCAGACCAAAAATTCATCTGGGTGGTT AGAAAAAATCGTCGAAATAACGGCGATGTAGAAGACTGGCTACCTGAAGGTTTTGAGGAAAGGACAAAAAGCAGAGGGATAATTATTAGAGGGTGGGCCC CACAGGTTTTGATATTGGAACACGTGGCGATCGGAGCCATAGTGACGCATTGCGGATGGAATTCCACGTTAGAGGCGATCTCTGCTGGTCTGCCGATGGT GACGTGGCCGGTGATGGCAGAACAGTTTTATAATGAAAAGTTGGTGACACATGTAGTGAAGATCGGGGTTGGAGTCGGGGCGGCACAATTGCCTTTGGGA ACGACGATTGAGGGTGTGAAGGTGGAGAGGGCTATAAAGAGGATTATGTCGACGGACGATGAAGAGGTGGCAAAGATGCGAAGTAGAGCGAAATATTTAG GGCATATGGCAAGGAAGGCCGTGGAAGAAGACGGATCTTCTTATTGTGATTTAGATGCTTTGATTGAAGAGTTGAGGTCGAATTGTAGAGCCTAA
AA sequence Show only first row Show all	>Lus10019833 pacid=23164037 polypeptide=Lus10019833 locus=Lus10019833.g ID=Lus10019833.BGIv1.0 annot-version=v1.0 MAKIFASRGVKVTIVTTPLNVPFFSKTISKHSESTGSEIRIQTLKFPTTEFGLPEGCENAEVITSMNLGWETFSKFFLASTKLQESLEKLLEEDRPDCLV ADMFFPWATDSSEKFGIPRLLFHGTSFFSLTVMDVLSRYEPHKDVSSDTEPFEVPGGLPDKIMLTKRQLPASAVATGQGDTFMWEFFKKVRESNSQGYGT VVNSFYELEPGYVDYYRNVFQRKAWHIGPVSLCNADVDDKANRGKESSIDWDYCLNWLDSKEPKSVVYICFGSVANFSAEQLKEIAIGIEASDQKFIWVV RKNRRNNGDVEDWLPEGFEERTKSRGIIIRGWAPQVLILEHVAIGAIVTHCGWNSTLEAISAGLPMVTWPVMAEQFYNEKLVTHVVKIGVGVGAAQLPLG TTIEGVKVERAIKRIMSTDDEEVAKMRSRAKYLGHMARKAVEEDGSSYCDLDALIEELRSNCRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	0	1
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	1.0	0.9962
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10023207 [exp]	2.4	0.9874
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	2.6	0.9868
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	3.9	0.9885
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	5.0	0.9875
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	5.7	0.9857
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	5.7	0.9896
AT5G52450			MATE efflux family protein (.1...		Lus10041994 [exp]	7.1	0.9766
					Lus10000859 [exp]	7.2	0.9850
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	7.5	0.9813

Compare expression of checked genes

Lus10019833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.