Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15480 454 / 2e-156 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 449 / 1e-154 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34131 444 / 2e-152 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 434 / 1e-148 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT4G34138 419 / 9e-143 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36770 363 / 8e-121 UDP-Glycosyltransferase superfamily protein (.1) AT2G36780 361 / 4e-120 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 360 / 7e-120 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36790 354 / 3e-117 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G36800 352 / 1e-116 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014080 [exp] 521 / 0 AT2G15480 330 / 3e-110 UDP-glucosyl transferase 73B5 (.1.2) Lus10019833 [exp] 477 / 6e-166 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 466 / 2e-161 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014079 [exp] 442 / 8e-152 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019832 [exp] 428 / 3e-146 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 422 / 6e-144 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014086 [exp] 419 / 1e-142 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014084 [exp] 401 / 5e-136 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 380 / 7e-128 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099032 [exp] 522 / 0 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303700 [exp] 517 / 0 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098966 [exp] 517 / 0 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303300 [exp] 512 / 2e-179 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 511 / 8e-179 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 510 / 1e-178 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098400 [exp] 476 / 3e-165 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 473 / 9e-164 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 464 / 2e-160 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.002G123700 [exp] 406 / 1e-137 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10019835 pacid=23164020 polypeptide=Lus10019835 locus=Lus10019835.g ID=Lus10019835.BGIv1.0 annot-version=v1.0 ATGGCAGTAGCAGGACAATCATCCTCCATGGAGAAACAAGAAGAACAACCCCTCCACATCTTCGTCTTCCCTTTCATGGCGCACGGCCATACAATCCCAA TGATCGACACAGCAAAGCTCCTAGCATCCAGAGGAGTCAGAATAACTCTCCTCACAACCAAATTAAACTCCCCGCTATTCACCAAATCCACCCTCAACTT CCCTCCATCCACTATCGCCGTCCACGCTTTCGATTTCCAAACCGCCGCCGCCGGCCTCCCCGACGGATGCGAGGATTTCGACTTCATCAGCTCTCGGAAT TCGAGCTTCGACGTCATCGCCAACTTCTTCAAGGCGACGTTCATGCTCCAGGACCAATTCGAAGATTTAATCGCAAAAACACGGCCCGACTGCGTCATCT CCGACGCCTTCTTTCCCTGGACCACCGCTTCCGCGGCGAAGTACGGCATCCCGCGGCTCGTCTTCCGAGGTACCAGCTTCTTCTCCTCTTGCGTTTCGGA ATTCATCACGAGGTATAAACCTCACGACGCCGTATCATCGGATTCGGAACCGTTCTTGGTGCCGGGTCTTCCTGACCCGGTTATGGTGACCCGGAATCAG ATGCCACCGCCGGATAAACTAACTAGTGAAACTTTCTTAGGAAAGGTATTGAAACAGATTGCTGACTCGGGTAAGGAGAGTTACGGATCGGTGAATAACA CGTTTCACGAGCTGGAACCAGCTTATGCAGATCTGTATAATGAGATTTTAGGGGAGAAGAAGAAGGTTTGGAGCATTGGCCCTGTTTCGCTGTGTAATAA TGAAGTTAAAGACAGAGCAAACAGGGGAGGGAAAGAATCCTCCATCGACGAAGACTCTTTACTCCAATGGCTTGATTCGAAGCCGCCCAGATCCGTCGTC TACGTCTGCTTCGGAAGTTTAGCGAACTTCTCCGACTCGCAATTAAAAGAAATGGCCGCCGGTTTGGAAATTTCCGAGCATCGATTTATCTGGGTTGTGA GAAAGGGAGAAAAGAGCGGAGAAAAATCCGATTGGCTGCCGGAGGGATTCGAGGAGAGGATGGAAGGGAAGGGATTGATAATTCGGGGGTGGGCACCGCA GGTTTTGATTTTGGAACATAAAGCGGTGGGTGGATTTATTACACATTGCGGATGGAACTCCACAATGGAAGGGATAGCGGCAGGGGTGCCGATGGTGACG TGGCCGGTGTCGGCTGAGCAGTTTTATAATGAGACGTTTGTGACGGATATTCTGTGTGTGGGGGTTGGAGTGGGGGTTAAAGAGTGGACCATGTACGGGG GTGGTGTTGAGGGAGGGAAAGTGGCGGCGGCGGTGGTTAAGGTGATGTCGGAGTCGGCGGCGGCGGTGGAGATGAGGAGGAGAGTTGCGGAGTTGGGGAA GATGGCGAGGAGATCGGTTGAGGAAGGCGGGTCGTCGTTTGGGAATTTAGGGGAGTTAATTGAGGAGGTGAAACGATGTCGTATAGATAATTTCTAA
AA sequence Show only first row Show all	>Lus10019835 pacid=23164020 polypeptide=Lus10019835 locus=Lus10019835.g ID=Lus10019835.BGIv1.0 annot-version=v1.0 MAVAGQSSSMEKQEEQPLHIFVFPFMAHGHTIPMIDTAKLLASRGVRITLLTTKLNSPLFTKSTLNFPPSTIAVHAFDFQTAAAGLPDGCEDFDFISSRN SSFDVIANFFKATFMLQDQFEDLIAKTRPDCVISDAFFPWTTASAAKYGIPRLVFRGTSFFSSCVSEFITRYKPHDAVSSDSEPFLVPGLPDPVMVTRNQ MPPPDKLTSETFLGKVLKQIADSGKESYGSVNNTFHELEPAYADLYNEILGEKKKVWSIGPVSLCNNEVKDRANRGGKESSIDEDSLLQWLDSKPPRSVV YVCFGSLANFSDSQLKEMAAGLEISEHRFIWVVRKGEKSGEKSDWLPEGFEERMEGKGLIIRGWAPQVLILEHKAVGGFITHCGWNSTMEGIAAGVPMVT WPVSAEQFYNETFVTDILCVGVGVGVKEWTMYGGGVEGGKVAAAVVKVMSESAAAVEMRRRVAELGKMARRSVEEGGSSFGNLGELIEEVKRCRIDNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10024343 [exp]	1.0	0.8084
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	6.9	0.7744
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	7.9	0.8075
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	12.0	0.7928
					Lus10010742 [exp]	13.3	0.7792
AT1G71140			MATE efflux family protein (.1...		Lus10018136 [exp]	15.5	0.6630
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10000556 [exp]	15.7	0.7134
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	22.6	0.7359
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	23.0	0.7429
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018795 [exp]	23.4	0.7697

Compare expression of checked genes

Lus10019835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.