Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37880 383 / 2e-132 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 375 / 1e-129 zinc ion binding (.1.2) AT5G09630 287 / 7e-95 LisH/CRA/RING-U-box domains-containing protein (.1) AT3G55070 68 / 2e-12 LisH/CRA/RING-U-box domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014078 [exp] 498 / 1e-178 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10002832 [exp] 446 / 1e-157 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10027883 [exp] 438 / 3e-154 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10020487 [exp] 329 / 2e-111 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10007106 [exp] 150 / 5e-42 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10030305 [exp] 69 / 2e-12 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 69 / 2e-12 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128600 [exp] 486 / 5e-173 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 482 / 2e-171 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 391 / 1e-135 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 386 / 1e-133 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.008G047300 [exp] 73 / 4e-14 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2) Potri.010G213950 [exp] 40 / 0.0003 AT3G55070 0 / 1 LisH/CRA/RING-U-box domains-containing protein (.1.2) Potri.011G046200 [exp] 40 / 0.0008 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019837 pacid=23164015 polypeptide=Lus10019837 locus=Lus10019837.g ID=Lus10019837.BGIv1.0 annot-version=v1.0 ATGGATCTGAACCCTATTAAGGATGCATTCGATCGTGTTGCGAAGAAGCAGAAGCTGTCCAGTTCCAAAGCTCAAGAAGTGCTGGATCAGATTCTGAGAG AGATCGAAACGGCTTTAGGAAGCATACAATCAGAAGCGCTCGAGTCCGGACCTTGCTGTAAAGATGTTCTAACTGAAGTGAAGCAAAAGCTGCAGGTGGT TTCTCCCGTTACTCAGCTGGAAGGCACGCAGAAGGAACTGAACATAGCTTTGAGCAAGTACCCGAAGCAACTCGAGAGATCGTTCAATCCGGATATATCC AAGGCTTACAGAAACGTTGAATTCGACACATCCACTGTAAACCAGATCATCGCAAGCCATTTCTACCGACAAGGTATGTTTGATATCGGCGATTGCTTCA TAAGTGAAGTCAAGGAACCGGACTGTGCCATTACAATGAGAGCACTCTTCTCGGAAATGTACTCGTTGCTCGAGGCTCTGAAGGAGAGGAACTTAGGACC TGCATTATCCTGGGTTTCTGCCAACTCAGCTACGCTTAAAGAAAACGGGTCAGATCTCCAGCTCAAGCTTCATCAGTTGCAGTTTGTCGAAATCTTGCAG AATGGGAGCAGGAAGGAAGCTCTAAGTTACGCGAGAACGAACATTGCTCCGTTTGCTGCCAACCTTGTGCAATCCTCGGAGATCCCACTTAGCGTAACGA TAGCAGCAGGGTACCAGGGGTTACCGCCACTGTTGAAATTCATGACGGTGATGGCTGCCAAGAAGCAAGAGTGGCAAACTATGAAGCAGTTACCGGTCCC TGTCGAGCTCGGGGGTGAATTCCAGTTCCATTCGGTGTTTGTGTGTCCAGTGTCAAAGGAGCAATCGACGGATGAGAATCCTCCGATGTTGATGTCGTGC GGGCACGTGCTGTGCAAGCAGTCAATAAATAAGATGTCGAAGAACAACACAAAGACGTTCAAGTGCCCTTACTGTCCGACTGATATTGAATCAACGAAGT GTAAACAGCTCTACTTCTGA
AA sequence Show only first row Show all	>Lus10019837 pacid=23164015 polypeptide=Lus10019837 locus=Lus10019837.g ID=Lus10019837.BGIv1.0 annot-version=v1.0 MDLNPIKDAFDRVAKKQKLSSSKAQEVLDQILREIETALGSIQSEALESGPCCKDVLTEVKQKLQVVSPVTQLEGTQKELNIALSKYPKQLERSFNPDIS KAYRNVEFDTSTVNQIIASHFYRQGMFDIGDCFISEVKEPDCAITMRALFSEMYSLLEALKERNLGPALSWVSANSATLKENGSDLQLKLHQLQFVEILQ NGSRKEALSYARTNIAPFAANLVQSSEIPLSVTIAAGYQGLPPLLKFMTVMAAKKQEWQTMKQLPVPVELGGEFQFHSVFVCPVSKEQSTDENPPMLMSC GHVLCKQSINKMSKNNTKTFKCPYCPTDIESTKCKQLYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	0	1
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	1.0	0.9685
AT2G24550			unknown protein		Lus10026939 [exp]	4.6	0.9560
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	5.5	0.9522
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	5.5	0.9475
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	5.7	0.9601
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	7.2	0.9552
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Lus10035771 [exp]	9.6	0.9217
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	10.6	0.9443
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	12.1	0.9108
AT4G19160			unknown protein		Lus10025855 [exp]	12.7	0.9492

Compare expression of checked genes

Lus10019837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.