Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34110 182 / 8e-52 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G23350 162 / 2e-44 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G49760 123 / 2e-30 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G71770 111 / 3e-26 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G22760 107 / 3e-25 PAB3 poly(A) binding protein 3 (.1) AT2G36660 87 / 2e-18 PAB7 poly(A) binding protein 7 (.1) AT3G16380 78 / 2e-15 PAB6 poly(A) binding protein 6 (.1) AT3G19350 63 / 3e-12 MPC maternally expressed pab C-terminal (.1) AT5G44200 62 / 9e-11 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) AT3G53460 57 / 6e-09 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002835 [exp] 173 / 5e-48 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 165 / 5e-45 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 161 / 1e-43 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 159 / 6e-43 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014392 [exp] 95 / 1e-20 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 92 / 8e-20 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027733 [exp] 91 / 2e-19 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 87 / 2e-18 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10021396 [exp] 65 / 3e-11 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304000 [exp] 181 / 3e-51 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 178 / 6e-50 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 171 / 3e-47 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 167 / 4e-46 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 127 / 4e-32 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.005G198500 [exp] 125 / 3e-31 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 93 / 3e-20 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.017G014600 [exp] 62 / 1e-10 AT5G44200 331 / 2e-115 CAP-binding protein 20 (.1.2) Potri.005G125300 [exp] 61 / 4e-10 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G137400 [exp] 59 / 1e-09 AT5G44200 327 / 9e-114 CAP-binding protein 20 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10019838 pacid=23163937 polypeptide=Lus10019838 locus=Lus10019838.g ID=Lus10019838.BGIv1.0 annot-version=v1.0 ATGGCTCAGATTCAGGTATCGGTTCAGGCAGATAACATGTCAACATCACTATACGTGGGTGATCTTGACATCCATGTCAAAGAGGAGGAACTGTACAACC TATTCAATCGGGTGGGGCAGGTTATGTCGGTTCGTATTTGTAGGGACATCAATACTAGAAATTCTCTTGGCTATGCGTACGTTAACTTGGTTCATGCCCA AAATGCTGCGGACGCAATAGAAATGTTAAACTTCGCCCCGATGAATGGTAAACCAATTAGAATTATGTTCTCACGTCGTGACCCTAGCCTTCGCAGAAGT GGCTTTGGAAATTTGTATGTCAAGATGAGGGAGTTGGACGGGAAGGTTTTTGGCAACAGACCGGTGTATGTTTCGATAGCACGGGACAAGGATGATCGAC GAGCTAGACATCAGGCTCAATCTGCTGAGATGAATCCTGAGGCATGGACGCCTGCCGTTGCACCTGGCATTCCCCAGGCATGGCCGCCTGCAGTTGCATT TGGCATTCCTGTGGGTCGTCCAAGGGGACAACCGATGTTTTACGCTCCGCAACCCCCTTTTGTTCCTCAGCCTAGCTATTATTATGGTAATGGCTATTAT GGGTACCCGTCCCACCCGCAACAATTTGTGCCTGGCATAAGGTCATGGGGACAATCTATGCCACATCACTTTGTCCCGATGGTTCCTCAAGGCCAGCAGG GCCCTAACGGTCGACAACAGTTTTATCGACCGCCAGGTCCACCACCATTCATGCACCAACGACAGATGCTTCCACGAGGGCCTCGTGGTTACCGCCAGCC CTCTGGGCGCGGCATGCCTGATGGTGGTCCCGTGGCTGGTCCGTATGCTGGCCGGCTTAATCGTCCTGTCCCGATCGGAGCTTTGGTTGCTGCACTTGAA AATGCTACTCCACACCAGCAGATGAATATGCTGGGGGAGAATCTATATCCACTGGTGGAACAGCTGGAGCCCGGTAATGCTGGCAAGGTCACTGGTATGC TGCTGGAGATGCATCAGCAAGATGTGCTGCACTTATTGGAGTCACCGGAAGAACTCAGGGGATATGTTGCGGAGGCAATGGACGTGTTGAGGCGCGCGGC ACCAGGTGATGCAGGTGCGGGTGCAGCTGAGGAGCAAGTGTCTTCACCGCCGCCGAACGACAGCATTGCGACTTAA
AA sequence Show only first row Show all	>Lus10019838 pacid=23163937 polypeptide=Lus10019838 locus=Lus10019838.g ID=Lus10019838.BGIv1.0 annot-version=v1.0 MAQIQVSVQADNMSTSLYVGDLDIHVKEEELYNLFNRVGQVMSVRICRDINTRNSLGYAYVNLVHAQNAADAIEMLNFAPMNGKPIRIMFSRRDPSLRRS GFGNLYVKMRELDGKVFGNRPVYVSIARDKDDRRARHQAQSAEMNPEAWTPAVAPGIPQAWPPAVAFGIPVGRPRGQPMFYAPQPPFVPQPSYYYGNGYY GYPSHPQQFVPGIRSWGQSMPHHFVPMVPQGQQGPNGRQQFYRPPGPPPFMHQRQMLPRGPRGYRQPSGRGMPDGGPVAGPYAGRLNRPVPIGALVAALE NATPHQQMNMLGENLYPLVEQLEPGNAGKVTGMLLEMHQQDVLHLLESPEELRGYVAEAMDVLRRAAPGDAGAGAAEEQVSSPPPNDSIAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Lus10019838 [exp]	0	1

Compare expression of checked genes

Lus10019838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.