Lus10019839 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34100 1618 / 0 RING/U-box superfamily protein (.1.2)
AT4G32670 226 / 8e-61 RING/FYVE/PHD zinc finger superfamily protein (.1)
AT3G19370 171 / 2e-43 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3)
AT2G23360 156 / 3e-38 Plant protein of unknown function (DUF869) (.1)
AT1G19835 90 / 1e-17 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
AT4G36120 86 / 2e-16 Plant protein of unknown function (DUF869) (.1)
AT1G47900 85 / 5e-16 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
AT2G02960 62 / 6e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
AT1G14260 61 / 3e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
AT1G02610 59 / 5e-09 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014076 3137 / 0 AT4G34100 1575 / 0.0 RING/U-box superfamily protein (.1.2)
Lus10004994 176 / 3e-44 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1)
Lus10024324 91 / 1e-17 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Lus10024325 88 / 6e-17 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Lus10012431 87 / 1e-16 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Lus10034509 84 / 5e-16 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Lus10033160 83 / 2e-15 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Lus10030472 61 / 3e-09 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
Lus10012826 60 / 7e-09 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G099400 1682 / 0 AT4G34100 1607 / 0.0 RING/U-box superfamily protein (.1.2)
Potri.001G304100 1644 / 0 AT4G34100 1553 / 0.0 RING/U-box superfamily protein (.1.2)
Potri.001G304200 325 / 1e-93 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1)
Potri.009G099500 312 / 3e-89 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1)
Potri.007G046100 218 / 2e-57 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1)
Potri.005G140300 206 / 2e-53 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1)
Potri.005G237100 86 / 2e-16 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Potri.002G024400 86 / 3e-16 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Potri.002G083400 69 / 3e-11 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Potri.010G169200 62 / 1e-09 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
CL0229 PF05911 FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence
>Lus10019839 pacid=23164072 polypeptide=Lus10019839 locus=Lus10019839.g ID=Lus10019839.BGIv1.0 annot-version=v1.0
ATGGTGTTTTTCCAATCTTTGGTTTTTAGTTGTGATATTGGTTTTAATTGCTGTTTTTACCCGAACAATGTGATTTGTAGAACTGAAGGCCTTTGGTCTT
TCGGTGTGGCGGCGAGGTACGATGATGATGATGACGAGGAAGGGGACGTCTGCAGGATCTGTAGGAACCCTGGCGACGCGGAGAATCCGCTTAGGTATCC
TTGTGCTTGTAGTGGGAGTATTAAGTTTGTTCATCAGGATTGCCTCCTGCAGTGGCTGAATCACAGCAACGCCCGTCAGTGCGAGGTCTGCAAACATCCA
TTCTCCTTCTCTCCTGTCTATGCTGAAAATGCTCCATCGAGGCTTCCTTTTCAAGAATTTCTAGTTGGAATGGGGATGAAGGCATGCCATGTGATGCAAT
TCTTTTTGCGCCTTAGTTTTGTGCTCTCTGTGTGGCTCCTAATTATACCTTTCATAACATTTTGGATATGGCGTCTGGCCTTCTTGAGAAGTTTTGGTGA
TGCCCAGAGGTTGTTCTTGAGTCATGTCTCGACTACGGTTATTCTCACTGATTGTCTGCACGGGTTCCTGCTCTCTGCCAGCATTGTGTTCATTTTTCTT
GGAGCAACCTCTCTGAGAGATTACTTTCGTCATTTAAGAGAAATTGGTGGACAGGAAGTTGAGAGAGAAGAAGATGAAGGGGATAGAAACGGTGCCCGTG
TACCAAGGCGGCCTCTGGTACAGGAAAATAGAAATTTTGCTGGTGAGCCAAATGTTGAGGATGTTGGGGATGGAGGGGCACAAGGAATTGCTGGTGCTGG
TCAACTAATCAGAAGAAATGCAGAAAATGTTGCTGCTCAGTGGGAGATGCGAGCGGCTCGACTTGAAGCTCATGTTGAACAGATGTTTGATGGCTTAGAA
GACGCTGATGGTGCTGAGGACGTGCCTTTTGATGAACTTGTTGGGATGCAGGGTCCTGTTTTCCATTTGGTTGAAAATGCATTTACGGTTCTTGCAAGCA
ACATGATATTCCTTGGAGTTGTGATCTTTGTGCCCTTTTCGTTGGGACGGATTATACTCTACTACATATCTTGGCTATTCTCTTCTGCTAGGGGTCCTGT
ACTGTCAACTGTTGCAACGCTGAATGAATCTGGCCTCGCCCTTGCAAATATCACCCTGAAGAATGCATTAACAGCTGTGGCTAATCTGACCTCTGAGCCC
CATGATGGTGGCCATTTGAGCCATGTAGCTGAGACTGTTGGAATAAATGCTAGTGGATTACATGAGGCCTCAAGCAATGTAAGTACTTCACTCGCGAGTG
ATCTCTTAGAAGGGGCTACTATCGGTACTTCTCGGCTTTCAGATGTTACAACCCTTGCTATTGGCTATATGCTAATAGGCTTCCTAGTTTTCCTTTATCT
TGGTGTTGTTGCTTTGATTCGGTACACGAAGGGGGAGCCGTTGACCATGGGAAGGTTCTATGGTATTGCTTCATTAGCAGAGACAATTCCCTCACTCTTC
AGGCAATCCTTGGCAGCAATGAGGCATCTCATGACTATGATTAAAGTTGCCTTCCTTCTAGTAATTGAACTTGGGGTCTTTCCTCTGATGTGTGGCTGGT
GGCTTGACGTATGTACCATAAGGATGTTCGGAAAGTCTATGTCTCAACGAATTCAATTCTTCTCAGCTTCCCCACTGGCTAGCTCTTTGATTCACTGGGT
GGTGGGAATCGTCTACATGCTACAGATAAGCATCTTTGTCAGCCTTCTCCGAGGGGTTTTGCGTCGTGGAGTTCTTTATTTTCTGCGAGATCCTGCTGAT
CCAAACTACAATCCCTTCCGTGATTTAATTGATGATCCTGTGCACAAGCATGCTCGAAGGGTTCTGTTGTCTGTTGTTGTGTATGGGAGCTTGATTGTTT
TGCTGGTATTTTTACCTGTCAAACTTACAATGCGAATGGCCCCATCCATCTTTCCACTAGACATATCGGTGTCTGATCCATTCACGGAAATTCCAGCTGA
CATGCTTCTATTTCAAATTTGCATCCCATTTGCTGTTGAGCATTTTAAGCTGCGGACCACAATCAAGTCTCTCCTTCGTTATTGGTTTACAGCTATTGGG
TGGGCGCTTGGTTTGTCCTACTATTTATTGCCTAGACCTGGTGATGATAATGGTGGCCAAGAAAATGGCAATGTAGAACCTGGAAGGCAGGATCAGTTAC
AGGCTGTGCAGTTGGGGGGCCATGATCGTGCTCTGGCAGTAGCAGCTGTCGATGATCCCAACAGAGGAATTCCTGCAGCTGGGAATTTAAATGATGTGGA
GGAAGATGTGAATGATGATCAATCTGATTCTGGTTCATATTTCAGCAGGTCGAGTTTTATTTTCCGGATCGTGCTCTTGTTGGTGATAGCGTGGATGACC
CTTCTGGTCTTCAACTCTGCTTTGATCATTATACCCGTGTCACTTGGTCGTTCCCTTTTCAATGCCATTCCTCTTCTCCCGATAACACACGGCATCAAAT
GCAATGATCTATACGCTTTTATTATCGGAAGCTACGCCATTTGGACCACTCTGGCTGGAGCTAGATATTGTTTGGAGCATGTGAGAACAAAGAGAGCAGC
AGTGTTGTTTAATCAGATCCGGAAGTGGTGTGGCATCGTTCTCAAGAGCACTGCGCTACTTTCAATATGGGTTTTTGTCATTCCGGTGATGATTGGTCTG
TTGTTTGAGCTTCTGGTGATTGTTCCGATGCGGGTGCCTGTCGATGAAAGTCCAGTCTTTCTCTTGTATCAAGACTGGGCATTGGGACTGATCTTCCTTA
AGATCTGGACTAGACTGGTCATGCTCGATCACATGATGCCACTCGTCGATGAAACCTGGCGCATAAAATTCGAGCGGGTGCGGGAAGATGGCTTCTCGCG
GCTGCAAGGTCTTTGGGTGCTGCGTGAGATCGTGTTCCCAATAGTGATGAAGCTACTAACAGCCCTATGCGTGCCCTACGTCCTGGCAAGAGGAGTATTC
CCCGTATTCGGCTACCCATTAGTTGTTAACTCCGCAGTCTACAGGTTCGCCTGGCTGGGTTGCCTCTCCCTCAGCGTATTCTGCTTCTGCGCCAAGAGGT
TCCACGTCTGGTTCACCAACCTCCACAACTCGATCCGGGACGATCGGTACCTCATCGGCCGCAGGCTCCATAACTTCGGAGAGCACACCGAGGCGGCAAA
GCAGGAGGACGAGGCCGGGCCTTCAGAGGAAGCAGAGAGCTCAGGTAATGCCATGTTCGGTAATGAGAGAGAAGCTGAAGTAGGGTTGAGATTGAGAAAA
CAACCTTATCTCCCCCATTCTTTACCATGCCTTGGTGTCTGCGAAAATATTGAAGGACTTCAAGTTCTTGATACTGCATTGGCTTTGAGAGCTGATATTG
TTATGGACAACGATCCATGGCTATGGAAGAGGAGTTTTGCACAGAGAACAGTTAATGTTGCAGCAAAAAGCTATGGCAGTCCTGGGACAAGAGTTACTTG
TGAAGAGGCGAAGAAGATTCCTGCCAAGACTGTAGCTTTACCTTCCAAAATTGTGAAGAACCTGAATGAGAAGCTAGCTTCAGTGATTCTTGATGATCAG
CTGGCCAAACATGATCACTTTCTTGTACAACATGAGGATGAATTCTCTGCAGGCTTGGAGAAGGAAGAAGAAGAAGAGATTTTCTTGAAAAAGGAACTTA
CTGAGGAGGATCTAAGGCAGGGAGTACCAGCAAGGAAATCTCATCCGGATGCTTCAACGAAGCATTTCATGTGGCAGTTGAGCACCATCCCTGAAGAACA
AGAGCTGAAGATGGAACATGAAGCTACCACTGGTGGTACACATCCATCTCCCGAGCACGAAGATTTAGAGAAGAATAAGTTGACCGACACGAGCAAAAGG
CTCGCGAATTTAGTGATCGAGAACACGAAATTGAGCAGGAGTTTAATGTTGAAAGAGGAATTGGTTGACCAACTGCATAAGCAAGCATCTCAGAGATCGG
CAGAGTTCAACGCACTCATGTCGAGATTGGACACCACGGAGAAAGAAAACGCATTTCTAAAGTACGAGTTCCACATGCTCGAGAAAGAGATCGAGGTACG
TAGCGAGGAACTAACGTACAGTCGCCAATCTGCCGATGCGACCAGAATGCAGCACCTGGAATGCGTGAAGACGGTTGCCAAGCTGGAAGCGGAATGCCAG
ATGCTTCGTAGCAGCTCGACAAGTAAGGGGCAGAACCGGAATTTCCTGTTGGAAGAGAACAGGAGTCTCAAGGAGACACTGAGGAAGAAGAATGCAGAAC
TTCATTCTTCTCGCGGAATGTTCTCAAGAGCAGCCTCGAGGCTGTCACAGGCGGAAGCTCAACTGGCAGAACTTTCGAGGAAGGGTGCGAAGGCTATGGA
GCCAGTGAAGCACAGTTCTGACATTTGCAGCGACGATGAAGTTAGCTCTTCCTCGGGGTCATGGGCTAATGCTCTACTTTCAGAACTGGAACATTTTAGA
TATGGTAAAGTCAATACTCAACGTCAAGACTGCAAAGCAATCGGAAGCTTGGACATGAGTCTGATGGATGACTTTGTCGAGATGGAGAAATTCGCCATCG
TTTCAGTTGGCGACGATGCCTCCTCGAAGAATGTTACTAGTGGTGATGATGATGGTGATAAAGATCAAGACTTTGACTGGCTTCAGGTTGTTTTGAAGGC
ACTGATGAAGCAACAGCGGGTTTCAAATCGTAGCCTGCCTGAACTTCTCGAGGATATCAAGATCGCTATTGGCCAGGAATGTGTTCAATTATCTAACATG
GTCAAAGAAAATAAGATACTGAAAGATGAGCTACAGTCGGAAACTGAGAAGGCCGAGGCTTTGGCGAAAGAAGCTCGAGACTTGAGAACAGAATTAGAAA
CTGTAAGAGATGAGAAGTCAATGGTTGAGGAGCAGATGGAGAACCAGAAGTCAATGAATGAGGATCTTGACACTCAGCTTACTGTGGCTAAATCCAAGCT
GAATGAGATCATGCAGAAGTATTCATGCCTCGAGGTCGAATTGGAGGATAAGACCGACTGTTGCGAAGAGCTGGAATCGACATGTCTCGACCTTCAACTC
CAACTCGAAAGTGTGGGAAGCAATGAAACTATGAACAATACCATCACCGAAGAGGAAAAACAATCATCCCAAAATGGATGGGAGATCACGGCAGCCTCTG
CGAAGCTAGCCGAATGCCAAGAAACCATCTTGAACCTCGGGAAACAGCTAAAGGCATTGGCTTCACCGCGGGAAGCTGCACTTTTCGACAAGGTTTTCAA
TGCCACCAATGGCACAGCCATTGTCACCACCACCACCAATAACAACAACAGGAACATCTACAGGCGCTTCTCGTTACACGATCAGATGGTCGCTGAAGAC
AAAGCTAAAGCAATCATACTATACTCTCCCAAGGAAGATTCGGTGCGAAAATACGCAGACAGGCCAGATGAAGCGAAGGGAGCTGCAGAATGTGATAATA
AAACGGCTGATATGACTCTAGTCATTGTACCTACTAAACGACAGGCCGGAATCGGGTTTTGGAAGAAGCTACTAATGAGGAGGAAGAAAGGAGGAAGCAA
GAAGTCTCAGTCTTTGGTAAAAGTATAA
AA sequence
>Lus10019839 pacid=23164072 polypeptide=Lus10019839 locus=Lus10019839.g ID=Lus10019839.BGIv1.0 annot-version=v1.0
MVFFQSLVFSCDIGFNCCFYPNNVICRTEGLWSFGVAARYDDDDDEEGDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHP
FSFSPVYAENAPSRLPFQEFLVGMGMKACHVMQFFLRLSFVLSVWLLIIPFITFWIWRLAFLRSFGDAQRLFLSHVSTTVILTDCLHGFLLSASIVFIFL
GATSLRDYFRHLREIGGQEVEREEDEGDRNGARVPRRPLVQENRNFAGEPNVEDVGDGGAQGIAGAGQLIRRNAENVAAQWEMRAARLEAHVEQMFDGLE
DADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILYYISWLFSSARGPVLSTVATLNESGLALANITLKNALTAVANLTSEP
HDGGHLSHVAETVGINASGLHEASSNVSTSLASDLLEGATIGTSRLSDVTTLAIGYMLIGFLVFLYLGVVALIRYTKGEPLTMGRFYGIASLAETIPSLF
RQSLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSQRIQFFSASPLASSLIHWVVGIVYMLQISIFVSLLRGVLRRGVLYFLRDPAD
PNYNPFRDLIDDPVHKHARRVLLSVVVYGSLIVLLVFLPVKLTMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRTTIKSLLRYWFTAIG
WALGLSYYLLPRPGDDNGGQENGNVEPGRQDQLQAVQLGGHDRALAVAAVDDPNRGIPAAGNLNDVEEDVNDDQSDSGSYFSRSSFIFRIVLLLVIAWMT
LLVFNSALIIIPVSLGRSLFNAIPLLPITHGIKCNDLYAFIIGSYAIWTTLAGARYCLEHVRTKRAAVLFNQIRKWCGIVLKSTALLSIWVFVIPVMIGL
LFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDETWRIKFERVREDGFSRLQGLWVLREIVFPIVMKLLTALCVPYVLARGVF
PVFGYPLVVNSAVYRFAWLGCLSLSVFCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEHTEAAKQEDEAGPSEEAESSGNAMFGNEREAEVGLRLRK
QPYLPHSLPCLGVCENIEGLQVLDTALALRADIVMDNDPWLWKRSFAQRTVNVAAKSYGSPGTRVTCEEAKKIPAKTVALPSKIVKNLNEKLASVILDDQ
LAKHDHFLVQHEDEFSAGLEKEEEEEIFLKKELTEEDLRQGVPARKSHPDASTKHFMWQLSTIPEEQELKMEHEATTGGTHPSPEHEDLEKNKLTDTSKR
LANLVIENTKLSRSLMLKEELVDQLHKQASQRSAEFNALMSRLDTTEKENAFLKYEFHMLEKEIEVRSEELTYSRQSADATRMQHLECVKTVAKLEAECQ
MLRSSSTSKGQNRNFLLEENRSLKETLRKKNAELHSSRGMFSRAASRLSQAEAQLAELSRKGAKAMEPVKHSSDICSDDEVSSSSGSWANALLSELEHFR
YGKVNTQRQDCKAIGSLDMSLMDDFVEMEKFAIVSVGDDASSKNVTSGDDDGDKDQDFDWLQVVLKALMKQQRVSNRSLPELLEDIKIAIGQECVQLSNM
VKENKILKDELQSETEKAEALAKEARDLRTELETVRDEKSMVEEQMENQKSMNEDLDTQLTVAKSKLNEIMQKYSCLEVELEDKTDCCEELESTCLDLQL
QLESVGSNETMNNTITEEEKQSSQNGWEITAASAKLAECQETILNLGKQLKALASPREAALFDKVFNATNGTAIVTTTTNNNNRNIYRRFSLHDQMVAED
KAKAIILYSPKEDSVRKYADRPDEAKGAAECDNKTADMTLVIVPTKRQAGIGFWKKLLMRRKKGGSKKSQSLVKV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G34100 RING/U-box superfamily protein... Lus10019839 0 1
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10002880 6.3 0.7877
AT4G24200 Transcription elongation facto... Lus10009128 6.5 0.7992
AT3G22440 FRIGIDA-like protein (.1) Lus10006113 6.7 0.7748
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10033962 10.2 0.7663
AT5G16280 Tetratricopeptide repeat (TPR)... Lus10013588 10.2 0.8032
AT2G31890 ATRAP RAP (.1) Lus10006143 10.4 0.6954
AT1G10170 ATNFXL1 NF-X-like 1 (.1) Lus10025071 10.6 0.7459
AT3G51120 DNA binding;zinc ion binding;n... Lus10025973 10.7 0.7898
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Lus10009558 12.0 0.7651
AT1G72740 MYB Homeodomain-like/winged-helix ... Lus10040111 16.5 0.6863

Lus10019839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.