Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49200 155 / 2e-44 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 154 / 9e-44 O-acyltransferase (WSD1-like) family protein (.1) AT5G53390 152 / 3e-43 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 151 / 6e-43 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 134 / 8e-37 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT5G53380 123 / 9e-33 O-acyltransferase (WSD1-like) family protein (.1) AT2G38995 122 / 2e-32 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT5G37300 122 / 4e-32 WSD1 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 117 / 2e-30 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 116 / 5e-30 O-acyltransferase (WSD1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014075 [exp] 433 / 1e-156 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 266 / 4e-87 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10002836 [exp] 201 / 8e-66 AT5G53390 96 / 2e-23 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 138 / 5e-38 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 130 / 3e-35 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 91 / 7e-21 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 87 / 9e-20 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 86 / 6e-19 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10030257 [exp] 77 / 2e-16 AT5G53390 202 / 2e-61 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304600 [exp] 309 / 9e-104 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 148 / 2e-41 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 117 / 3e-30 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 105 / 4e-26 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 93 / 1e-21 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 89 / 2e-20 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 88 / 5e-20 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 87 / 1e-19 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 82 / 9e-18 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019840 pacid=23164038 polypeptide=Lus10019840 locus=Lus10019840.g ID=Lus10019840.BGIv1.0 annot-version=v1.0 ATGCTGTTCCTCTGTCTTTGTGCTATGCAGACTATTAATGATGTTCTGTTCGGTGTTGTAACATCTGGACTATCAAAGTACTTGGACCATCGATCTCCAA AAGCTGTGAAGCAAGGACAGCAAATTACAGGGGTGGCCATGGTCAACCTAAGAAAACAGCCTGGATTGCAGGAATTATCAGACATGACGGAAAGTTCTTC AGCAGCTAAGTCGGGGAACAAATTTGGGATAATGTTGTTACCATTGTTTTACCAGCATATCAGTGAAGACTCGGATCCTCTCGAGCATGTCCGGATTGCC AAGAAGATCATCGACAGGAAGAAAACATCGATCGAATCCCACTTCTCTTACCAAGTCGGCGATCTACTCCTGTCCTTGCTCGGACCAAAGGCAGCCTGCA TTTGTAACCATAGTATCATGTCGAACACGACGTTTACGATATCCAACGTTGTTGGACCCAAGGAGGAAATCTCCATTGCTGGGAATCTCGTCACTTACAT CAGAGTCAATACCTCAAGCCTTCCTCATGCTTTGACAATGCACATGGTCAGCTATGCAGGAAGAGCTGACATGCAGATCTTAGTGGCCAAGGACATAATC CCAGACCCTGAGTTTCTGGCTAAGTGCTTCGAAGATTCTTTGCTCGAGATGAAAACTGCAGCTCAAAAAGCTGCTTCCTTGACTTCCTGA
AA sequence Show only first row Show all	>Lus10019840 pacid=23164038 polypeptide=Lus10019840 locus=Lus10019840.g ID=Lus10019840.BGIv1.0 annot-version=v1.0 MLFLCLCAMQTINDVLFGVVTSGLSKYLDHRSPKAVKQGQQITGVAMVNLRKQPGLQELSDMTESSSAAKSGNKFGIMLLPLFYQHISEDSDPLEHVRIA KKIIDRKKTSIESHFSYQVGDLLLSLLGPKAACICNHSIMSNTTFTISNVVGPKEEISIAGNLVTYIRVNTSSLPHALTMHMVSYAGRADMQILVAKDII PDPEFLAKCFEDSLLEMKTAAQKAASLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	0	1
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	6.9	0.8983
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	6.9	0.9209
AT1G44542			Cyclase family protein (.1)		Lus10014091 [exp]	9.5	0.9008
AT3G53490			unknown protein		Lus10015041 [exp]	11.9	0.9141
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	12.5	0.8918
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	12.7	0.8971
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	13.3	0.9182
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	15.4	0.8996
AT2G17350			unknown protein		Lus10026564 [exp]	15.7	0.8766
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	17.9	0.8931

Compare expression of checked genes

Lus10019840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.