Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34050 466 / 8e-169 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G26220 288 / 6e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G67980 258 / 6e-87 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G67990 235 / 5e-78 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24735 234 / 7e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G62000 165 / 3e-50 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 152 / 4e-45 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014074 [exp] 508 / 0 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 486 / 8e-177 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 485 / 1e-176 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034584 [exp] 243 / 3e-81 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10012913 [exp] 238 / 1e-78 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009484 [exp] 233 / 1e-74 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021804 [exp] 160 / 2e-49 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10036339 [exp] 162 / 6e-49 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010276 [exp] 108 / 2e-28 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099800 [exp] 457 / 2e-165 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G304800 [exp] 452 / 1e-163 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.018G070300 [exp] 281 / 3e-96 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136600 [exp] 251 / 2e-84 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.010G104400 [exp] 243 / 2e-81 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.002G183600 [exp] 156 / 1e-46 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G104400 [exp] 43 / 0.0001 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019841 pacid=23163943 polypeptide=Lus10019841 locus=Lus10019841.g ID=Lus10019841.BGIv1.0 annot-version=v1.0 ATGGCTGAGCAACAGCAATCGGGGGAGAATGTCAGCAGGCATCAGGAAGTCGGCCACAAGAGTCTCCTCCAGAGCGATGATCTTTACCAGTATATTCTCG AGACGAGCGTTTACCCAAGGGAGCCGGAGTCGATGAAGGAACTCCGAGAGGTCACCGCCAAACACCCCTGGAATATCATGACCACGTCTGCCGACGAAGG ACAGTTCCTCAACATGCTACTGAAGCTCATCAATGCTAAGAACACAATGGAGATCGGCGTCTACACTGGCTACTCCCTTCTCGCCACCGCCCTCGCTCTC CCCGACGACGGCAAGATCTTGGCAATGGATATCAACAGAGAGAACTACGAAATCGGCCTGCCAATCATCGAGAAAGCCGGACTTGCTCACAAGATCGAGT TCAAAGAAGGCCCAGCACTCCCCGCTCTTGACAAGATGGTCGAAGATAAAGCCAACCACGGAGCGTACGACTTCATATTTGTGGACGCGGACAAGGACAA CTACATCAACTACCACAAGAGGCTGATCGACTTGGTGAAGATCGGTGGAGTCATCGGGTACGACAACACCCTATGGAACGGGTCCGTAGTCGCGCCTCCT GATGCGCCGTTGAGGAAGTACGTTAGGTACTACAGGGACTTCGTTTTGGAGCTGAACAAGGCGCTCGCTGCTGACCCGAGGATCGAGATCTGCATGCTCC CCGTTGGAGATGGAATCACTCTCTGCCGCCGGATCAGCTAA
AA sequence Show only first row Show all	>Lus10019841 pacid=23163943 polypeptide=Lus10019841 locus=Lus10019841.g ID=Lus10019841.BGIv1.0 annot-version=v1.0 MAEQQQSGENVSRHQEVGHKSLLQSDDLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAL PDDGKILAMDINRENYEIGLPIIEKAGLAHKIEFKEGPALPALDKMVEDKANHGAYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPP DAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10019841 [exp]	0	1
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	1.7	0.9668
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	6.9	0.9576
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	8.5	0.9541
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10027888 [exp]	8.6	0.9597
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	9.2	0.9519
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	11.8	0.9494
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10042658 [exp]	12.2	0.9573
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	12.2	0.9528
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	13.6	0.9569
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	13.7	0.9584

Compare expression of checked genes

Lus10019841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.