Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49780 254 / 7e-84 PUB26 plant U-box 26 (.1) AT3G19380 231 / 1e-74 PUB25 plant U-box 25 (.1) AT5G11550 72 / 8e-15 ARM repeat superfamily protein (.1) AT3G49810 67 / 8e-13 ARM repeat superfamily protein (.1) AT5G65920 64 / 5e-12 ARM repeat superfamily protein (.1) AT3G52450 58 / 5e-10 PUB22 plant U-box 22 (.1) AT5G37490 56 / 4e-09 ARM repeat superfamily protein (.1) AT3G02840 56 / 4e-09 ARM repeat superfamily protein (.1) AT4G16490 55 / 6e-09 ARM repeat superfamily protein (.1) AT3G01400 55 / 7e-09 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014073 [exp] 367 / 3e-129 AT1G49780 281 / 2e-92 plant U-box 26 (.1) Lus10011691 [exp] 77 / 3e-17 AT5G11550 160 / 2e-48 ARM repeat superfamily protein (.1) Lus10040125 [exp] 72 / 5e-15 AT3G02840 164 / 1e-48 ARM repeat superfamily protein (.1) Lus10001079 [exp] 72 / 1e-14 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10010598 [exp] 70 / 8e-14 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10013584 [exp] 57 / 1e-09 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 57 / 2e-09 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10007738 [exp] 56 / 6e-09 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10016565 [exp] 55 / 9e-09 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140100 [exp] 311 / 3e-106 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.009G100200 [exp] 311 / 5e-106 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.006G240400 [exp] 89 / 8e-21 AT5G11550 179 / 1e-53 ARM repeat superfamily protein (.1) Potri.015G031000 [exp] 72 / 1e-14 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.007G105300 [exp] 71 / 2e-14 AT1G49780 157 / 8e-44 plant U-box 26 (.1) Potri.002G116600 [exp] 71 / 4e-14 AT3G49810 546 / 0.0 ARM repeat superfamily protein (.1) Potri.012G042600 [exp] 70 / 7e-14 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.006G277700 [exp] 70 / 7e-14 AT3G49810 498 / 3e-175 ARM repeat superfamily protein (.1) Potri.005G063700 [exp] 67 / 8e-13 AT1G49780 139 / 3e-37 plant U-box 26 (.1) Potri.016G069400 [exp] 64 / 5e-12 AT3G52450 511 / 0.0 plant U-box 22 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019842 pacid=23164091 polypeptide=Lus10019842 locus=Lus10019842.g ID=Lus10019842.BGIv1.0 annot-version=v1.0 ATGGAGGCGCGGGTGTCCTGCGCGGCGGTGATCGAGATGGTCGTCGTCGGGACTCGGTGCTCCGATCTGAGGGCTCAGATCTCGTCCGTCGACGAGATCC ACGAAGGAGTGGTGGAGATGTTAAGAAATCCATTCCCATATCCCCGCGCTCTAAAAGTAGGAATCAAGGCTCTGTTCGCTCTCTGCCTAGCCAAACAAAC TCGCCACAAGGCGATTGCAGCCGGCGCAGCAGAGACGCTCGTCGACAGGCTAGCAGACTTCGACAAGTGCGACGCCGAGCGCGCTCTGGCAACCATGGAG CTCCTCTGCCGCGTTCCGTCAGGGTGCGAAGCTCTCGCAGATCACGCGCTGACAGTTCCTCTGCTCGTGAAAACAATACTTAAGATCTCCGATAGAGCAA CGGAGTACGCCGCCGGAGCTCTCCTCGCTCTTTGCTCCTCATCCGAGCAGTGCCAGAGGGAAGCCGTCAGGGCCGGAATACTTACTCAGATGCTTCTCCT CGTGCAGAGCGACTGCACGGACAGGGCGAAGAGGAAAGCTCAGATGCTTTTGAAACTGATGAGGGACTCCTGGCCGGAGGATTCGTCAGGATACTCCGAC GACTTCGTTTACAGCGAGGTCGTCCCCTTTTGA
AA sequence Show only first row Show all	>Lus10019842 pacid=23164091 polypeptide=Lus10019842 locus=Lus10019842.g ID=Lus10019842.BGIv1.0 annot-version=v1.0 MEARVSCAAVIEMVVVGTRCSDLRAQISSVDEIHEGVVEMLRNPFPYPRALKVGIKALFALCLAKQTRHKAIAAGAAETLVDRLADFDKCDAERALATME LLCRVPSGCEALADHALTVPLLVKTILKISDRATEYAAGALLALCSSSEQCQREAVRAGILTQMLLLVQSDCTDRAKRKAQMLLKLMRDSWPEDSSGYSD DFVYSEVVPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10019842 [exp]	0	1
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004289 [exp]	5.3	0.8909
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	7.1	0.8725
AT4G03600			unknown protein		Lus10018599 [exp]	9.9	0.8483
					Lus10014171 [exp]	11.9	0.8709
AT1G27170			transmembrane receptors;ATP bi...		Lus10032101 [exp]	12.0	0.8577
AT4G03600			unknown protein		Lus10039834 [exp]	12.4	0.8525
AT2G36330			Uncharacterised protein family...		Lus10002372 [exp]	15.9	0.8512
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	16.4	0.8283
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	16.5	0.8698
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	20.6	0.8607

Compare expression of checked genes

Lus10019842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.