Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49740 511 / 0 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 498 / 2e-176 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 449 / 5e-157 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 398 / 8e-137 PLC-like phosphodiesterases superfamily protein (.1) AT1G13680 330 / 5e-111 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014072 [exp] 748 / 0 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 456 / 7e-159 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012600 [exp] 384 / 7e-132 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 379 / 4e-129 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 373 / 1e-127 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 372 / 6e-127 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 341 / 6e-115 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 279 / 4e-93 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 178 / 5e-54 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140200 [exp] 580 / 0 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 506 / 3e-179 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 496 / 2e-175 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 392 / 4e-134 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 389 / 1e-132 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 384 / 2e-131 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 382 / 4e-131 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 367 / 9e-127 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 363 / 2e-123 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019843 pacid=23163945 polypeptide=Lus10019843 locus=Lus10019843.g ID=Lus10019843.BGIv1.0 annot-version=v1.0 ATGATGCAATTGCAGGTAGCAGTGCTCTTTTTCCCTGATCCATTTCTCATTTCTAAGAGAACCATTTCCATAGCTGCTCTGTTGGCAGCAACTTTCCTCC TCACTTTCTCCACTGCTCTCGAGGAAGGCCAAACTTGTGCATCGAACAGATTCTGCGACTCGGGGCTCCACTGCGAGACATGTTTGGCTAATGGGAGTGC CCGCCCTCGTTGCACCAGAACCCAACCCATTCTCCCAACTTCAAAGGTGAAGGGATTGCCATTCAATCGGTACACATGGCTAACAACCCACAATTCGTTT GCCAGATTAGGGTCCAGGTCTGCAACTGGATCCATCATTCTCGCCCCTACCAACCAGCAGGACTCCATTACTAGTCAGCTCAATAATGGTGTTAGAGGTT TGATGCTAGACATGTATGACTACTTGAACGATATCTGGTTGTGCCACTCGTTCGGAGGGAGATGCTTCAACTTGACAGCTTTTCAACCAGCTGTGAATGT TCTCAAGGAGATTCAAGTCTTCCTAGAATCGAACCCCTCCGAAATCGTCACAATCTTCATAGAGGACTATGTCACATCCCCAAACGGACTAACCAAAGTT TTCGACGCTGCTGGTTTGCGGAAGTACTGGTTTCCTGCATCCCGGATGCCCAAGAATGGCGGGGATTGGCCTACGGTGGATGACATGGCGAAGAACAATC AGCGGTTAGTAGTCTTTACCTCGAAGTCAGCCAAGGAAGCATCGGAAGGGATCGCTCACGAGTGGAGTTACGTTGTCGAAAACCAATATGGGAATAAAGG AATGGTGGATGGATCATGTCCGAACCGTGGAGAATCATCAGCCATGAATGTTAAAACAAGGTCATTAGTGTTGGTGAACTACTTCCCTGATAATCCAAAT TTAGCACAGGCTTGTAAGCACAACTCTGCCCCTTTGCTAAGCATGGTAAAAACATGTCATCTCGAAGCTGGCACCCGATGGCCTAACTTCATCGCTGTCG ATTTCTACATGAGGAGCGATGGAGGGGGGGCTCCATTAGCAACGGATGTCACGAATGGAGGGATCGTTTGCGGGTGTGGGAACATCGCATCTTGCAGGCA AAGTATGGTGTATGGACAATGTGAGGTGCCAGAGGCTGCTGCAGCTCCAGCAGCTGTGTCAAATAAATCAAATTCCTCTGGTGAAAGAGCAGCTGTTCAG CAATGGTGGATGGTTGGAGCAACTATTGCCTCGGTTTCTTCTCTCATTATGGGTCTACTTTAG
AA sequence Show only first row Show all	>Lus10019843 pacid=23163945 polypeptide=Lus10019843 locus=Lus10019843.g ID=Lus10019843.BGIv1.0 annot-version=v1.0 MMQLQVAVLFFPDPFLISKRTISIAALLAATFLLTFSTALEEGQTCASNRFCDSGLHCETCLANGSARPRCTRTQPILPTSKVKGLPFNRYTWLTTHNSF ARLGSRSATGSIILAPTNQQDSITSQLNNGVRGLMLDMYDYLNDIWLCHSFGGRCFNLTAFQPAVNVLKEIQVFLESNPSEIVTIFIEDYVTSPNGLTKV FDAAGLRKYWFPASRMPKNGGDWPTVDDMAKNNQRLVVFTSKSAKEASEGIAHEWSYVVENQYGNKGMVDGSCPNRGESSAMNVKTRSLVLVNYFPDNPN LAQACKHNSAPLLSMVKTCHLEAGTRWPNFIAVDFYMRSDGGGAPLATDVTNGGIVCGCGNIASCRQSMVYGQCEVPEAAAAPAAVSNKSNSSGERAAVQ QWWMVGATIASVSSLIMGLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	0	1
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	4.0	0.7033
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	7.1	0.6978
AT1G72190			D-isomer specific 2-hydroxyaci...		Lus10009456 [exp]	9.9	0.5861
AT2G33205			Serinc-domain containing serin...		Lus10011768 [exp]	10.4	0.6498
AT5G02440			unknown protein		Lus10016560 [exp]	12.0	0.6283
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	15.7	0.6361
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	20.9	0.6366
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	35.2	0.5681
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	35.5	0.6124
AT3G54880			unknown protein		Lus10038690 [exp]	38.7	0.5621

Compare expression of checked genes

Lus10019843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.