Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19300 743 / 0 Protein kinase superfamily protein (.1) AT1G49730 725 / 0 Protein kinase superfamily protein (.1.2.3.4) AT5G54590 254 / 2e-77 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT5G15730 243 / 5e-73 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G07070 238 / 1e-71 Protein kinase superfamily protein (.1) AT3G58690 237 / 2e-71 Protein kinase superfamily protein (.1) AT3G24540 239 / 5e-71 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G06840 248 / 9e-71 Leucine-rich repeat protein kinase family protein (.1) AT5G38560 243 / 9e-71 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G52290 238 / 1e-70 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014071 [exp] 1204 / 0 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10032672 [exp] 247 / 1e-74 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10008491 [exp] 246 / 2e-74 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 246 / 2e-74 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10008540 [exp] 243 / 4e-73 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10038174 [exp] 247 / 5e-73 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 240 / 1e-71 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030741 [exp] 237 / 2e-71 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10038172 [exp] 248 / 4e-71 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100400 [exp] 896 / 0 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 884 / 0 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.001G415300 [exp] 248 / 3e-75 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.017G101400 [exp] 247 / 6e-75 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 246 / 3e-74 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.011G131200 [exp] 244 / 1e-73 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.004G113400 [exp] 244 / 6e-73 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.006G114400 [exp] 254 / 7e-73 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G194300 [exp] 249 / 5e-72 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 244 / 6e-72 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019844 pacid=23164086 polypeptide=Lus10019844 locus=Lus10019844.g ID=Lus10019844.BGIv1.0 annot-version=v1.0 ATGGCGGTGGGAGTCAGGCAGCCGGTCTTGCTTTGGGGTTTGCTCGCTTTTCCGGCAATGCTGCTGCTTCTTTCTCCACCGGTCATTGCAGATTGCCCCT TGGATCTAAGTGGCTCAAATTTCACATTAGCAGCCTCATTGTGTTCTCCTAAGGAAGATCGAGGGAAGTGTTGCCGGTATATGAATGCTTTCATTGCTGT ATCTGTTGCTCGCTACGCAAATGCAACCAGTAACTTAGGGGTTCCCTCCAGTATATCAGATATGTGTATTAGCTCCATCACTCAAACCATGCGACTTTAC GGAGTCCCGCAGATTGCAACTGTTTTCTGTGGACTCGGTACCAAAATCCCTGTTAATTACGAGTGCGAGGGTCGAACCACTGTCGGTGAGATGCTGCAGT CTCCGGAATTTGATACCGTTGTGCAAAACTGCAAAGTCCCGGTTTCAGGGGAAAGTGATTGCAGGAAATGTTTGAATGCAGATATCATATACCTTCATCA TTTGGTTGGGACGGAAAATAACGTCACGCTGAGTACTTGTAGGGATGCAGCTTTTGTTGCCCTTACAAGTCAAGTTGGTAGTGCATCAACCATCGATTTT GCTCGTTGCTTCTTTCAGGTTGATGGCCTTGTAATGCCTCCAGGGTCATCTCCTCCTGCAAACATCACCGAGGCCTCTCCCAGTCCCTTATCGGCTTCAA GCCCCGATCAAGCAGGGTTGGGACTCATTCAAGAGGATAAACGTCACCATCCCTACCATTTGACGTTAATTCCTGCAATCGGGATGGCAGTCACATTGTT TGCTATCATCATGTTAGTGGTCTTGGTAGTTCTTATTCGACGGAAGAGCAGGGAGTTGGATGAACCAGACACTCTGGAGAAGGCATCTTCTAAAGCGTTC TCTGCATGGACTACAAGAAAATTTCAAGAAGGGTCTGCAGCAATGTTTCAGAAATTTGGCTATAAGGAAATAAAGAAAGCAACAGATACCTTTACCACAG TTATAGGTGAAGGTGGATTCGGAGTGGTCTACAAAGCTCAGTTCGGTGATGGCTCAGTGGTGGCGGTGAAGAGGATGAACAAAGTATCAGAACAAGGAGA AGATGAGTTCTGCAAAGAGATTGAACTTCTTGCTCGATTGCATCACCGTCATTTAGTCTCTCTACGAGGCTTCTGTGTAGAAAAACATGAGAGATTCCTT ATGTATGAATACATGGCAAATGGAAGCCTGAAGGATAATCTGCACTCTCCTGGAAATGCTCCTCTGAGTTGGCAGACCAGAATCCAAATCGCAATCGATG TGGCTAATGCTCTGGAGTACCTCCATTTCTACTGTGATCCGCCTCTTTGCCATGGAGACATCAAGTCCAGCAACATCTTGCTCGATGAAACATATGTAGC TAAGGTTGCAGATTTTGGACTTGCACATGCTTCAAAAGATGGTTCAATATGCTTTGAACCTGTAAATACTACTGATATTAGAGGAACCCCAGGGTATATG GATCCTGAATATGTTGTTACTCAAGAGCTCACAGAGAAAAGCGATGTCTACAGCTACGGGGTGGTTCTGTTGGAGATGGTTACGGGAAGGCGAGCAATAG AAGACAACAAGAATCTGGTGGAATGGTCCCAAACATTCATGGTTTCAGAATCAAGACTAATCGAATTAGTCGATCCAGGTATAAAGGAATCTTTCGACTT CGACCAGCTACACGCGATTGCCACGATCGTGAGATGGTGCACCCAGAAGGAAGCCCGCGCCAGGCCTTCGATTAAGCAGGTGCTTAGGCTACTGTACGAG AGCTCGGACCCGTTGCACAGCGGGTTCGTTCAAGCGTTGGAAGGCGAAGAATTCGAAGGGAGCGAAGGCAGAGGAAGGAGTAGAAGTAAAGGGAAAACGA ACATAAGTGGTGATGTAATTTTCCACAGTGGAGATGTTAGATGTCTTGCCTCCTCTTCGAGTACGTCGAGGTCGTATTGTAGCCGAACCTTTTTACTCGA AACTGGTTCGCCTCAGTCGCCCAACAACAGTAGCCAACTATAG
AA sequence Show only first row Show all	>Lus10019844 pacid=23164086 polypeptide=Lus10019844 locus=Lus10019844.g ID=Lus10019844.BGIv1.0 annot-version=v1.0 MAVGVRQPVLLWGLLAFPAMLLLLSPPVIADCPLDLSGSNFTLAASLCSPKEDRGKCCRYMNAFIAVSVARYANATSNLGVPSSISDMCISSITQTMRLY GVPQIATVFCGLGTKIPVNYECEGRTTVGEMLQSPEFDTVVQNCKVPVSGESDCRKCLNADIIYLHHLVGTENNVTLSTCRDAAFVALTSQVGSASTIDF ARCFFQVDGLVMPPGSSPPANITEASPSPLSASSPDQAGLGLIQEDKRHHPYHLTLIPAIGMAVTLFAIIMLVVLVVLIRRKSRELDEPDTLEKASSKAF SAWTTRKFQEGSAAMFQKFGYKEIKKATDTFTTVIGEGGFGVVYKAQFGDGSVVAVKRMNKVSEQGEDEFCKEIELLARLHHRHLVSLRGFCVEKHERFL MYEYMANGSLKDNLHSPGNAPLSWQTRIQIAIDVANALEYLHFYCDPPLCHGDIKSSNILLDETYVAKVADFGLAHASKDGSICFEPVNTTDIRGTPGYM DPEYVVTQELTEKSDVYSYGVVLLEMVTGRRAIEDNKNLVEWSQTFMVSESRLIELVDPGIKESFDFDQLHAIATIVRWCTQKEARARPSIKQVLRLLYE SSDPLHSGFVQALEGEEFEGSEGRGRSRSKGKTNISGDVIFHSGDVRCLASSSSTSRSYCSRTFLLETGSPQSPNNSSQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	0	1
AT5G47540			Mo25 family protein (.1)		Lus10041405 [exp]	1.0	0.9211
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	1.4	0.9137
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	3.5	0.8787
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	3.5	0.9045
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	4.5	0.8790
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	5.3	0.8769
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	5.7	0.8878
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	7.5	0.8743
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	7.9	0.8298
AT5G28150			Plant protein of unknown funct...		Lus10020240 [exp]	8.4	0.7951

Compare expression of checked genes

Lus10019844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.