Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15560 487 / 3e-169 Putative endonuclease or glycosyl hydrolase (.1) AT3G62210 118 / 9e-30 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT3G62200 122 / 3e-29 Putative endonuclease or glycosyl hydrolase (.1) AT5G61180 112 / 2e-27 Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 113 / 3e-26 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT5G09840 109 / 5e-25 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 99 / 3e-23 Putative endonuclease or glycosyl hydrolase (.1.2) AT5G64710 101 / 2e-22 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G60940 90 / 6e-20 Putative endonuclease or glycosyl hydrolase (.1) AT4G30760 62 / 5e-11 Putative endonuclease or glycosyl hydrolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009982 [exp] 113 / 2e-26 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 108 / 1e-24 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10033511 [exp] 105 / 1e-23 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 0 / 1 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140400 [exp] 677 / 0 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 662 / 0 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.001G307700 [exp] 121 / 7e-29 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 118 / 1e-28 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 114 / 3e-27 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 114 / 7e-27 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 114 / 1e-26 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 113 / 3e-26 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 103 / 3e-23 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10019845 pacid=23163977 polypeptide=Lus10019845 locus=Lus10019845.g ID=Lus10019845.BGIv1.0 annot-version=v1.0 ATGCCTGTTGATTCCTTTGAACAATGTGAGAAGCAAGTGTCAAGTTCGAATTCGTTGATGTGTCAACCTAGTACTAGCCACCAGAACCGAGCAATGTCCG ATGGTCCTGTTGCTATCCTTTGGGACATTGAGAATTGCCCTGTGCCTAGTGATGTACGGCCTGAGGATGTAGGTGGCCATATAAGGATGGCTTTAGAGGT GCATCCTGTGATCAAGGGAGCTGTCATGATGTTTTCTGCCTTCGGGGATTTCAATGCCTTTCCTAGGCGTCTTCGGGAGGGATGTCAGAGAACTGGTGTT AAGCTTGTTGATGTTCCAAATGGTAGGAAAGATGCAGCTGATAAGGCTATTCTGGTTGACATGTTCTTATTTGCTCTTGATAACCCGCCTCCGTCTTCCA TTATGCTCATTTCGGGAGATGTTGATTTCGCTCCAGCATTGCATATTCTAGGTCAACGTGGATATACTATTATCTTGGTTACCCCTTCTAATGTCGGTGT ATCGTCTGCTTTGTGCAATGCTGGTAAATTTGTTTGGGATTGGTCAAGCGTAGCCCATGGAGAAGGCTTCATCCCACTGCCAAAGTCCATAATGCCCCCT TATGCAATGCCAGTAGACCTTAGCATCACCGGGTTCCATATAAATGAGAGTTTTGATTGTCAAAATGAGGAGGAGGCCATCCTCTACCGAGGAAGTTCTC AAAGCTATCACAAATCGAGGGAATTCTCGTTAGCTCCACACTCTTTAGCAGAATATAACGGTAACATGCCTAATTTCCCTAGAGGTCTGAGATCGCAAAG TCTTCCCAACGGTATGAATGAAGGACACGCATGCTCTGGTTCTTATGACGAACAAGACAACTCTCCGATGTGGGTTCAACCTGGGGACATAAACGGTTTG AAAGTACAGGTAGTGAAGTTACTTGAACTTGCAGGTGGTGGTTTATCTCTTAACCGTGTTCCATCCGAGTACCAAAAGTTGTATGGGCGGCCACTTTATG TATCAGAGTATGGAGCATGCAAGCTGATAAATCTTTTCAAAAAAATGAATGATGTAATGGCTATCGAAGGTAAAGGTCAAAAGAGATTCGTCTACATTAG AAATTGTAGAGCAGGTCCGAGTGCTCCTCCCTTGAGTCTTGCTAAAAAGGATAGGAAAGGTAAAGGGACTCAAGAGAGTGGTGCTGGTGTTGGTTCTTCA GATGAGTTCTCAGACGAGGATAGAGTAGCAGTTGAAGAACCCGATGAGAGGATTAGCACAGTGAAGTCTAGTACAATAGCTGCTGCTCAATTCAACAGAA ACTTGGGACAATTCAAGAACGAGTTACAGTATATTCTAGCTAGCTATGCTTGTTCCATTTTGTTACCATTGAAAAGTTTTGAAGGGATATACCAACAACG TTACAAGAAGTCACTTGACCTCCACTGCTTTGGTGTCACGAAACTGGAGGAGCTTTTCGAAAAACTTGGAGATGTTGTTGCCTTGCATGAAGATCCTATG AGCAAGGAGAAGTTTGTGGGTGCCATTGGTGGCTAG
AA sequence Show only first row Show all	>Lus10019845 pacid=23163977 polypeptide=Lus10019845 locus=Lus10019845.g ID=Lus10019845.BGIv1.0 annot-version=v1.0 MPVDSFEQCEKQVSSSNSLMCQPSTSHQNRAMSDGPVAILWDIENCPVPSDVRPEDVGGHIRMALEVHPVIKGAVMMFSAFGDFNAFPRRLREGCQRTGV KLVDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVTPSNVGVSSALCNAGKFVWDWSSVAHGEGFIPLPKSIMPP YAMPVDLSITGFHINESFDCQNEEEAILYRGSSQSYHKSREFSLAPHSLAEYNGNMPNFPRGLRSQSLPNGMNEGHACSGSYDEQDNSPMWVQPGDINGL KVQVVKLLELAGGGLSLNRVPSEYQKLYGRPLYVSEYGACKLINLFKKMNDVMAIEGKGQKRFVYIRNCRAGPSAPPLSLAKKDRKGKGTQESGAGVGSS DEFSDEDRVAVEEPDERISTVKSSTIAAAQFNRNLGQFKNELQYILASYACSILLPLKSFEGIYQQRYKKSLDLHCFGVTKLEELFEKLGDVVALHEDPM SKEKFVGAIGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15560			Putative endonuclease or glyco...		Lus10019845 [exp]	0	1
AT1G16916			unknown protein		Lus10032325 [exp]	4.0	0.8092
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	6.2	0.8021
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004561 [exp]	6.5	0.7865
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	6.5	0.7974
AT4G00960			Protein kinase superfamily pro...		Lus10015423 [exp]	17.7	0.7901
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	18.8	0.7878
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10035285 [exp]	21.5	0.7823
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	21.8	0.7571
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	26.7	0.7389
AT1G61470			Polynucleotidyl transferase, r...		Lus10000561 [exp]	29.0	0.6588

Compare expression of checked genes

Lus10019845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.