Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15570 184 / 6e-60 TRX-M3, GAT1, ATHM3, ATM3 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) AT3G15360 110 / 1e-30 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) AT1G03680 102 / 6e-28 ATHM1, ATM1, TRX-M1 ARABIDOPSIS THIOREDOXIN M-TYPE 1, thioredoxin M-type 1 (.1) AT4G03520 100 / 1e-26 ATHM2 Thioredoxin superfamily protein (.1.2) AT1G76760 76 / 2e-17 ATY1, TRX-Y1 thioredoxin Y1 (.1) AT1G43560 71 / 9e-16 ATY2 thioredoxin Y2 (.1) AT1G50320 69 / 1e-14 ATHX, ATX thioredoxin X (.1) AT1G52990 68 / 6e-14 thioredoxin family protein (.1) AT4G12170 65 / 9e-14 Thioredoxin superfamily protein (.1) AT3G06730 61 / 8e-12 TRXz, TRXP ,TRX z thioredoxin putative plastidic, Thioredoxin z (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014069 [exp] 342 / 3e-122 AT2G15570 182 / 3e-59 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) Lus10014798 [exp] 121 / 3e-35 AT3G15360 181 / 2e-58 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10040887 [exp] 121 / 4e-35 AT3G15360 182 / 4e-59 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10029755 [exp] 115 / 1e-32 AT3G15360 162 / 3e-51 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10029752 [exp] 114 / 2e-32 AT3G15360 165 / 3e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10042784 [exp] 114 / 3e-32 AT3G15360 165 / 4e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10018875 [exp] 69 / 5e-15 AT1G76760 176 / 6e-57 thioredoxin Y1 (.1) Lus10028569 [exp] 69 / 8e-15 AT1G76760 174 / 3e-56 thioredoxin Y1 (.1) Lus10039499 [exp] 61 / 1e-11 AT3G06730 238 / 9e-81 thioredoxin putative plastidic, Thioredoxin z (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100700 [exp] 214 / 9e-72 AT2G15570 193 / 2e-63 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) Potri.001G401500 [exp] 127 / 2e-37 AT3G15360 171 / 2e-54 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.005G058400 [exp] 126 / 5e-37 AT4G03520 157 / 6e-49 Thioredoxin superfamily protein (.1.2) Potri.011G120700 [exp] 125 / 1e-36 AT3G15360 190 / 1e-61 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.005G186800 [exp] 114 / 4e-32 AT4G03520 152 / 3e-47 Thioredoxin superfamily protein (.1.2) Potri.019G111200 [exp] 114 / 5e-32 AT4G03520 172 / 9e-55 Thioredoxin superfamily protein (.1.2) Potri.002G073000 [exp] 113 / 1e-31 AT4G03520 152 / 6e-47 Thioredoxin superfamily protein (.1.2) Potri.013G132200 [exp] 110 / 9e-31 AT4G03520 173 / 4e-55 Thioredoxin superfamily protein (.1.2) Potri.002G066800 [exp] 72 / 4e-16 AT1G76760 192 / 2e-63 thioredoxin Y1 (.1) Potri.007G074000 [exp] 69 / 7e-15 AT1G50320 201 / 3e-66 thioredoxin X (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10019847 pacid=23163960 polypeptide=Lus10019847 locus=Lus10019847.g ID=Lus10019847.BGIv1.0 annot-version=v1.0 ATGGCTACTTCTGCTTCCACGTGCTTCCGCGCTCTTCCTCTCCCCGCTTCACTCCAGCTCCGTCCAGCAGCGCAACTCAGTTCTAGCTCAGCAGTTTCTT TCCCGTTCGACTTCTCCGCCGACGTGAGAGGTGGATTAGCCCTCCGTTCAACCAACTCGCGTCCGTCTTCTCCCTTCAAGGTCGTCTGCATGCGTGGATC CAAAGCAGCTGTTGTCACCAAGGACTCATGGGAGAAGTCGATCCTGAAAAGCAATACCCCCGTGTTAGTCGAGTTCCATGCAAGCTGGTGTGGGCCCTGT AAGATGGTTCACCGCGTTATTGATGAGCTTGCTGTAGAATACGAAGGGAAAATCCAATGCTTTGTCCTCAACGCCGACAATGATATAAAAATCGCTGAGG ACTACCAGATCAAGGCTGTACCAGTGGTCCTGCTTTTCAAGAACGGTGAAAAGCGAGAGACTGTTGTCGGAACCATGCCCAAGGAATTCTACGCTGCTGC CATCGAGAGGGTTCTGAAGGCATGA
AA sequence Show only first row Show all	>Lus10019847 pacid=23163960 polypeptide=Lus10019847 locus=Lus10019847.g ID=Lus10019847.BGIv1.0 annot-version=v1.0 MATSASTCFRALPLPASLQLRPAAQLSSSSAVSFPFDFSADVRGGLALRSTNSRPSSPFKVVCMRGSKAAVVTKDSWEKSILKSNTPVLVEFHASWCGPC KMVHRVIDELAVEYEGKIQCFVLNADNDIKIAEDYQIKAVPVVLLFKNGEKRETVVGTMPKEFYAAAIERVLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10019847 [exp]	0	1
AT4G29120			6-phosphogluconate dehydrogena...		Lus10012950 [exp]	1.4	0.8790
					Lus10023370 [exp]	3.7	0.8830
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	8.0	0.8659
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	10.7	0.8682
AT4G16490			ARM repeat superfamily protein...		Lus10039047 [exp]	15.2	0.8442
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	16.1	0.8519
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	18.0	0.8384
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	20.2	0.8209
AT1G55265			Protein of unknown function, D...		Lus10013756 [exp]	20.3	0.8285
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10006369 [exp]	25.7	0.8322

Compare expression of checked genes

Lus10019847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.