Plant FIBer expression Database

Lus10019848 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34030 900 / 0 MCCB 3-methylcrotonyl-CoA carboxylase (.1)
AT2G38040 43 / 0.0006 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014068
[exp]
1103 / 0 AT4G34030 927 / 0.0 3-methylcrotonyl-CoA carboxylase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G100800
[exp]
989 / 0 AT4G34030 921 / 0.0 3-methylcrotonyl-CoA carboxylase (.1)
Potri.014G081000
[exp]
47 / 5e-05 AT2G38040 699 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Potri.006G095800
[exp]
46 / 7e-05 AT2G38040 870 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Potri.016G110500
[exp]
43 / 0.0005 AT2G38040 890 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0127 ClpP_crotonase PF01039 Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence
>Lus10019848 pacid=23164054 polypeptide=Lus10019848 locus=Lus10019848.g ID=Lus10019848.BGIv1.0 annot-version=v1.0
ATGTTAAGGATCGTGGCGAGAAGAATTGCTTCGGCTTCTTTAGCAGCATCGTCCAAGTCAAGCTGCTCGTCATCTCACCTACTGCGCCACACAAGAGGTT
TCAGCTTCGGAGTTCTTCCCGATGGTCTGGACAGGACTTCCGACGGCTTTTCCCGCAACTCTTTGGCTATGGAATCTCTCATTTCCCAGCTCCAATCCAC
CATAAACCAGGTTCTGGCTGGAGGAGGAGAATCGGCTGTCAAAAGGAACAGAAGCAGGAACAAGCTTTTGCCCAGAGAAAGAATTGACAAGCTGCTTGAT
CCCGGTTCTTCCTTTCTTGAGCTCTCTCAGCTTGCAGGCCATGAACTATATGATGATTCTCTGCCTTCTGGTGGAATAGTTACTGGAATGGGTCCTGTTC
ACGGCCGACTTTGCATGTTTGTAGCTAATGATCCTACTGTCAAAGGGGGGACTTATTATCCCATTACAGTGAAGAAGCATCTAAGGGCACAAGAGATTGC
TGCCCGTTGTAGACTGCCGTGCATCTATCTTGTTGATAGCGGAGGTGCTTTCCTTCCCAAGCAAGCGGAGGTTTTTCCCGACAAGGATAATTTCGGAAGG
ATTTTCTTCAATCAAGCTGTAATGTCTGCTGAAGGCATACCTCAGATTGCTCTGGTGTTAGGTTCCTGTACCGCTGGCGGTGCCTACATCCCTGCAATGG
CGGATGAAAGTGTGATGGTGAAGGGAAATGCAACCATATTTTTGGCTGGACCACCACTTGTCAAGGCTGCTACAGGGGAGGAAGTATCGGCTGAGGATTT
AGGAGGCGCTTCATTGCATTGCAAAACATCAGGAGTTTCGGACTATTTCGCTCAAGATGAATTGCATGCACTTGCTCTTGGAAGGAACATTATCAAGAAT
TTACATATGGCTGGAAAACATGGTGTGACGAGCGAAGGACATAATTTTGTTCCCGAGTACAAAGAGCCATTATATGACATAAAGGAACTGAGATCTATTG
CCCCAGCTGATCACAAGCAGGCCTTTGATATTCGATCTGTTATTGCTCGAATTGTTGATGGGAGTGAATTTGACGAATTCAAGAAACTATATGGAACAAC
CCTGGTAACTGGATTTGCGAAAATTTTGGGGCAGCCCGTGGGAATCATTGGAAACAACGGCATATTGTTTAATGAATCTGCTCTGAAAGGCGCACATTTC
ATTGAACTATGTAGTCAGCGTAAGATTCCTCTTGTTTTCTTGCAGAATATCACTGGATTCATGGTGGGATCAAGGTCTGAGGCAACTGGTATAGCGAAAT
CCGGAGCGAAAATGGTTATGGCTGTTTCTTGTGCTAAGGTTCCTAAGGTAACTATTATGGTTGGTGGAAGCTTCGGTGCTGGAAACTATGCAATGTGCGG
TCGTGCCTATAGTCCAGACTTCCTTTTCCTTTGGCCAAATGCCAGAATTTCAGTCATGGGAGGTGCTCAGGCTGCCGGGGTGCTATCTCAGATCGAAAAG
GCAAACAAGAAAAAACAGGGAATTCAGGTTCTGATCGGTAATGTTGACGGTTGGCAGTGGACGAAGGAAGAGGAGGAAAGCTTCAAGGAGAAGGTGGTTG
AGGCTTACGAAAGAGAAGGGAGCTCGTACTATTCGACCGCAAGGCTTTGGGACGACGGCATCATTGATCCAGCAGATACCAGAAAGGTAATAGGGCTCTG
CATATCAGCTACCGGGAACCGTCCTGTAGAAGACACCAAGTTTGGTGTGTTCAGGATGTAG
AA sequence
>Lus10019848 pacid=23164054 polypeptide=Lus10019848 locus=Lus10019848.g ID=Lus10019848.BGIv1.0 annot-version=v1.0
MLRIVARRIASASLAASSKSSCSSSHLLRHTRGFSFGVLPDGLDRTSDGFSRNSLAMESLISQLQSTINQVLAGGGESAVKRNRSRNKLLPRERIDKLLD
PGSSFLELSQLAGHELYDDSLPSGGIVTGMGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAARCRLPCIYLVDSGGAFLPKQAEVFPDKDNFGR
IFFNQAVMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNATIFLAGPPLVKAATGEEVSAEDLGGASLHCKTSGVSDYFAQDELHALALGRNIIKN
LHMAGKHGVTSEGHNFVPEYKEPLYDIKELRSIAPADHKQAFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKILGQPVGIIGNNGILFNESALKGAHF
IELCSQRKIPLVFLQNITGFMVGSRSEATGIAKSGAKMVMAVSCAKVPKVTIMVGGSFGAGNYAMCGRAYSPDFLFLWPNARISVMGGAQAAGVLSQIEK
ANKKKQGIQVLIGNVDGWQWTKEEEESFKEKVVEAYEREGSSYYSTARLWDDGIIDPADTRKVIGLCISATGNRPVEDTKFGVFRM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G34030 MCCB 3-methylcrotonyl-CoA carboxyla... Lus10019848
[exp]
0 1
AT5G57655 xylose isomerase family protei... Lus10006983
[exp]
1.7 0.9814
AT1G18270 ketose-bisphosphate aldolase c... Lus10002140
[exp]
2.0 0.9724
AT3G01640 ATGLCAK ARABIDOPSIS THALIANA GLUCURONO... Lus10022282
[exp]
2.0 0.9797
AT5G57655 xylose isomerase family protei... Lus10001321
[exp]
2.4 0.9797
AT1G18270 ketose-bisphosphate aldolase c... Lus10008753
[exp]
2.8 0.9654
AT4G26140 BGAL12 beta-galactosidase 12 (.1.2) Lus10006009
[exp]
3.9 0.9569
AT1G10070 ATBCAT-2 branched-chain amino acid tran... Lus10028246
[exp]
6.3 0.9529
AT5G46180 DELTA-OAT ornithine-delta-aminotransfera... Lus10023299
[exp]
7.7 0.9381
AT1G12780 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERAS... Lus10002246
[exp]
10.0 0.9694
AT1G23870 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTH... Lus10012990
[exp]
11.4 0.9515

Lus10019848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.