Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34020 512 / 4e-180 AtDJ1C DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) AT1G53280 323 / 1e-106 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) AT3G14990 303 / 3e-99 AtDJ1A DJ-1 homolog A, Class I glutamine amidotransferase-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014067 [exp] 716 / 0 AT4G34020 454 / 1e-157 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Lus10020345 [exp] 336 / 2e-111 AT1G53280 564 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10009525 [exp] 333 / 3e-110 AT1G53280 562 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100900 [exp] 605 / 0 AT4G34020 551 / 0.0 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Potri.011G111900 [exp] 350 / 5e-117 AT1G53280 581 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF01965 [flax] [poplar] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Lus10019849 pacid=23164023 polypeptide=Lus10019849 locus=Lus10019849.g ID=Lus10019849.BGIv1.0 annot-version=v1.0 ATGGAGTCCTTGTTCTGTATATTCTCTGCTCCTCCACCACCAAAGCTTCGCTCTTTCAAGCTCTACACAGTGGCTGTCTCTCCAACTTCCTCCCTCTCCG TGGAATCTCCTTCCCAGAGAAAATCAGCTGCTCCCATTAAGCAGTCTAGTAAACCCTCTTCCCAGACTGCTTTCTCTCCAATACCCACCTCGACATCCTC AGTCCCTCCCAAAATGGTCCTTGTTCCTATAGGTTTCGGCACAGAAGAAATGGAAGCTGTGATTATGATTGATGTTCTGCGGCGAGCTGGCGCTAAGGTA ACTGTGGCCTCAGTGGAACCACAGTTGAAGGTTGAGGCTGCAAGTGGTACTATATTAGTTGCTGACACCGCCATTTCTGCTTGTTCCAACGAGGTTTTCG ATCTCGTGGCTTTGCCGGGGGGAATGCCAGGATCAGCTAGATTGAGAGATTGTGAAGTTCTCCGCGAAATTACGAGCAAACAGGCCGATGCAGAAAGGTT ATACGGTGCGATATGTGCAGCTCCAGCCATAACACTTCTTCCATGGGGCCTCCTTAAAAGGAAGAAGATGACAGGCCACCCTGCTTTCAAGGACGCTCTT CCTACCTTCTGGGCTGTTGACACAAATCTTCAAGTTTCGGGGCACTTGACAACGAGCCGCGGCCCTGGGACGTCTTTTCAGTTTGCTATGTCCTTTGTGG ATCAGCTGTTTGGGGAGTCTGTTGCAAGACAAGTTGGAGAAAGCTTGTTGATGCATACAGGTGACAGTGACTGCAGAAAAGAAGAGTTTAACGCAACAGA ATGGTCCATCGGCCATAATCCTCGTGTGCTACTTCCAATCGCAAACGGTTCTGAGGAAATTGATATAGTTACTATCGTAGACATCTTGAGGCGAGCTAAG GCGGAAGTTTTTGTTGCTTCTATTCAAAAATCTCTGCAAATTGTGGCATCACAAGGCACAAAAATTGTTGCAGACAAGTTGATAAACGATGCTGCTGAAT CTGTATTTGATCTCATCATTCTACCGGGTGGTATCGGTGGATCAGAACGCCTACAAAAATCAAAGGTTCTGAAAAAGCTACTGCTGGAGCAAGATGCCAA TGGGAGAATATACGGAGCAGTTTGCTCGTCCACTTCAGTTCTTCATAAACATGGTTTGCTGAAGGATAAGAGAGTCGCTGCACATCCTGACATTACTAAT GAGCTAACCAGCAACGTGGTAGATAGTACAAAAGTCGTGATTGATGGAAAGCTGATCACAAGTAAGGGACACTCTACTGTAACGGATTTCGCACTGGCTA TCATTAGCAAGTTGTTTGGTCATGCAAGAGCGAGAAGTGTAGCTGAAGGCCTTGTGTTTGATTATCCTAGAAGTGAGTAG
AA sequence Show only first row Show all	>Lus10019849 pacid=23164023 polypeptide=Lus10019849 locus=Lus10019849.g ID=Lus10019849.BGIv1.0 annot-version=v1.0 MESLFCIFSAPPPPKLRSFKLYTVAVSPTSSLSVESPSQRKSAAPIKQSSKPSSQTAFSPIPTSTSSVPPKMVLVPIGFGTEEMEAVIMIDVLRRAGAKV TVASVEPQLKVEAASGTILVADTAISACSNEVFDLVALPGGMPGSARLRDCEVLREITSKQADAERLYGAICAAPAITLLPWGLLKRKKMTGHPAFKDAL PTFWAVDTNLQVSGHLTTSRGPGTSFQFAMSFVDQLFGESVARQVGESLLMHTGDSDCRKEEFNATEWSIGHNPRVLLPIANGSEEIDIVTIVDILRRAK AEVFVASIQKSLQIVASQGTKIVADKLINDAAESVFDLIILPGGIGGSERLQKSKVLKKLLLEQDANGRIYGAVCSSTSVLHKHGLLKDKRVAAHPDITN ELTSNVVDSTKVVIDGKLITSKGHSTVTDFALAIISKLFGHARARSVAEGLVFDYPRSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10019849 [exp]	0	1
AT1G55140			Ribonuclease III family protei...		Lus10015626 [exp]	1.7	0.8660
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021544 [exp]	2.8	0.8855
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	5.7	0.8506
					Lus10010883 [exp]	7.2	0.8695
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	7.7	0.8536
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	12.6	0.8575
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	12.7	0.8268
AT3G53630			unknown protein		Lus10024421 [exp]	14.5	0.8574
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	15.0	0.8444
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	17.5	0.8519

Compare expression of checked genes

Lus10019849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.