Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49720 175 / 8e-52 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT4G34000 110 / 2e-27 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G19290 105 / 2e-25 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G45249 98 / 8e-23 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT3G56850 75 / 2e-15 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT5G42910 62 / 8e-11 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 55 / 2e-08 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G41070 54 / 2e-08 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G44460 52 / 2e-07 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 46 / 2e-05 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014066 [exp] 437 / 9e-154 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10002399 [exp] 243 / 3e-78 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10027897 [exp] 149 / 9e-42 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10006489 [exp] 104 / 3e-25 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10009755 [exp] 94 / 4e-21 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10008928 [exp] 68 / 1e-13 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10017049 [exp] 69 / 5e-13 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028889 [exp] 69 / 5e-13 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 68 / 7e-13 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101200 [exp] 252 / 2e-81 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.004G140600 [exp] 231 / 3e-73 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.014G028200 [exp] 162 / 1e-46 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.002G125400 [exp] 132 / 3e-35 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.010G248300 [exp] 67 / 2e-12 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 66 / 3e-12 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 64 / 2e-11 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.006G083000 [exp] 63 / 6e-11 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G220700 [exp] 61 / 2e-10 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 57 / 2e-09 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019850 pacid=23164003 polypeptide=Lus10019850 locus=Lus10019850.g ID=Lus10019850.BGIv1.0 annot-version=v1.0 ATGGGGTCTCATTTCAACTTCAACAACTTTGGCAACATGGGAGATGAAGCTGGTACGAGGCCGCCAGTTGTGAGCTCGCCACTAATTCGCCAGTCTTCTG TATACTCCTTAACCTTTGATGAGTTCCAGAACACCTGGGGTGGAAGTCTAGGGAAGGATTTCGGGTCGATGAACATGGACGAGTTATTGAAGAACATATG CACTGCTGAGGAAACACATGCTATTACAAGCACCACCGGTGGTGTTGCTGAAACTTCTTCTGGTGGGAACAACCTACAGAGACAAGGGTCCTTGACCTTG CCTAGGACATATAAGGTTGGTTTCTACAGTGATTTGTCTAAAATAAACAATGACAACAGCGGGTTGGCTCTTGGGTTCCAACCACAACTAGCGAATAGAG ATAATAATAATAATCATAACAGTAGTTTTGTCATGAATCAAGTTTCCAACTTGGGAATGAATGTCGGGCCTCCTCCTCAGCAGTTACATCAATCCAGGAA TCAAAACCAACAACAGCCGCCTCTCTTTCCCAAGCCAGCTACTGTTGGATTTGCATCTCCGATGCATATGGCGAATGGTGCTCAGCTTGCGAGTCCAGGG GCAAGGAGCTCAGCTGTTGGAATGGGGAACACAGGGATAAACAACAATGGTTTGGCACGCAGGGGAAATGGTTTAGGAAATGCAGGTGTAACAGTCGCAA CAGCATCTCCTGGAAACCGGATATCCCCATCAGATGGAGTTTCTAGGAGCGATGCCGACACATCATCAGTCTCGCCAATCCCTTATGTTTTTAGCCGAGG AAGGAAGCCTAATGCAGCTTTGGAGAAGGTTGTTGAGAGAAGACACAGAAGGATGATCAAGAATAGGGAGTCTGCAGCACGATCTAGAGCTCGCAAGCAG GTGAGTTGCAAGTAG
AA sequence Show only first row Show all	>Lus10019850 pacid=23164003 polypeptide=Lus10019850 locus=Lus10019850.g ID=Lus10019850.BGIv1.0 annot-version=v1.0 MGSHFNFNNFGNMGDEAGTRPPVVSSPLIRQSSVYSLTFDEFQNTWGGSLGKDFGSMNMDELLKNICTAEETHAITSTTGGVAETSSGGNNLQRQGSLTL PRTYKVGFYSDLSKINNDNSGLALGFQPQLANRDNNNNHNSSFVMNQVSNLGMNVGPPPQQLHQSRNQNQQQPPLFPKPATVGFASPMHMANGAQLASPG ARSSAVGMGNTGINNNGLARRGNGLGNAGVTVATASPGNRISPSDGVSRSDADTSSVSPIPYVFSRGRKPNAALEKVVERRHRRMIKNRESAARSRARKQ VSCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10019850 [exp]	0	1
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	3.3	0.9561
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10024583 [exp]	3.9	0.9336
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	6.0	0.9324
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	7.3	0.9529
AT3G14280			unknown protein		Lus10003937 [exp]	9.1	0.9101
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Lus10035671 [exp]	11.0	0.9443
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	12.5	0.9480
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	13.4	0.9441
AT3G53400			unknown protein		Lus10019932 [exp]	13.9	0.9363
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	16.7	0.9384

Compare expression of checked genes

Lus10019850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.