Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12750 273 / 3e-91 ZIP1 zinc transporter 1 precursor (.1) AT1G31260 240 / 4e-78 ZIP10 zinc transporter 10 precursor (.1) AT1G05300 239 / 6e-78 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 235 / 2e-76 ZIP3 zinc transporter 3 precursor (.1) AT4G19690 232 / 3e-75 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT4G19680 223 / 2e-71 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT2G04032 223 / 2e-71 ZIP7 zinc transporter 7 precursor (.1) AT2G30080 207 / 1e-65 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT5G62160 207 / 3e-65 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT1G10970 181 / 1e-54 ATZIP4, ZIP4 zinc transporter 4 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014062 [exp] 472 / 1e-169 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10014063 [exp] 301 / 3e-102 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10024107 [exp] 276 / 3e-92 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041613 [exp] 276 / 3e-92 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10041647 [exp] 272 / 2e-90 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10006935 [exp] 240 / 2e-78 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10040615 [exp] 231 / 2e-74 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10031307 [exp] 165 / 2e-51 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10019853 [exp] 117 / 3e-33 AT3G12750 84 / 1e-20 zinc transporter 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160400 [exp] 296 / 4e-100 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.010G173300 [exp] 287 / 1e-96 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.006G006800 [exp] 281 / 3e-94 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.008G083100 [exp] 280 / 1e-93 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.006G006600 [exp] 271 / 1e-90 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.015G117900 [exp] 239 / 7e-78 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 236 / 3e-77 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.010G134300 [exp] 229 / 5e-74 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.001G279300 [exp] 192 / 8e-60 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1) Potri.009G074100 [exp] 188 / 3e-58 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10019854 pacid=23164055 polypeptide=Lus10019854 locus=Lus10019854.g ID=Lus10019854.BGIv1.0 annot-version=v1.0 ATGCTGGTGGTGAAGTCGTTCGCCGGAGGGGTGATCTTGGCGACCGGGATGGTCCACATTCTGCCCGATGCATTCGAGCAACTGGGGTCGCCTTGTCTGA GCGAAGTGCCGTGGAGGAAGTTTCCGTTCGCCGGGTTTCTGGCCATGATGTTTGCTATAGGGACGCTGTCGATGGAGTCGTTGGCGATGGGGTTTTATAA GAGACGACAGCTTGAGAAGACCGTCGATGATGATGACGGTGATCGTGAAGGCGGGATTGATCGGAAGGTTGACGGTGATAATTATGAGGATGAGATGCTC CGCCGGCGGATTGTTGCACAAATATTGGAGATGGGAGTAGTGGTTCATTCAACAATCATTGGAGTATCATTAGGCACTAGCAAGAGCACAAAGACAATCA AGCCCCTCATGGCAGCCTTGAGTTTCCATCAATTTTTCGAAGGTCTCGGCCTTGCCGGCTCAATCTCACAAGCAAATTTGAAGCTAAGAACAAGGATACT GATGGCGACATTCTTCTCGTTGACAACTCCGATTGGGATAGGGATAGGGATGGCGATATCGAGCAACTACGGAGACAACAACCCTAACTCTATAATCGTA CAAGGAATCTTCACTTCGGCATCCGCTGGGATTCTAGTCTACATGGCTCTCGTGGATCTATTGGCCACGGACTTCATGAGCTCCAAGATGTTGTTGTCTG ATTTCAGGGTTCAGTTTGGTGCCTATGCTTCCCTTTTCCTTGGAGCTGGTGCCATGTCTGTCTTGGCTCTTGTCGCTTAG
AA sequence Show only first row Show all	>Lus10019854 pacid=23164055 polypeptide=Lus10019854 locus=Lus10019854.g ID=Lus10019854.BGIv1.0 annot-version=v1.0 MLVVKSFAGGVILATGMVHILPDAFEQLGSPCLSEVPWRKFPFAGFLAMMFAIGTLSMESLAMGFYKRRQLEKTVDDDDGDREGGIDRKVDGDNYEDEML RRRIVAQILEMGVVVHSTIIGVSLGTSKSTKTIKPLMAALSFHQFFEGLGLAGSISQANLKLRTRILMATFFSLTTPIGIGIGMAISSNYGDNNPNSIIV QGIFTSASAGILVYMALVDLLATDFMSSKMLLSDFRVQFGAYASLFLGAGAMSVLALVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019854 [exp]	0	1

Compare expression of checked genes

Lus10019854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.