Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49710 648 / 0 ATFUT12, FUCTB, FUCT2, FUT12 fucosyltransferase 12 (.1) AT3G19280 647 / 0 FUCTA, FUCT1, ATFUT11, FUT11 fucosyltransferase 11 (.1) AT1G71990 74 / 6e-14 ATFT4, ATFUT13, FUCTC, FT4-M, FUT13 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014060 [exp] 1003 / 0 AT1G49710 642 / 0.0 fucosyltransferase 12 (.1) Lus10002401 [exp] 766 / 0 AT1G49710 607 / 0.0 fucosyltransferase 12 (.1) Lus10027899 [exp] 716 / 0 AT3G19280 580 / 0.0 fucosyltransferase 11 (.1) Lus10009440 [exp] 76 / 1e-14 AT1G71990 603 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Lus10006076 [exp] 74 / 9e-14 AT1G71990 607 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101500 [exp] 746 / 0 AT3G19280 701 / 0.0 fucosyltransferase 11 (.1) Potri.019G091200 [exp] 100 / 9e-26 AT3G19280 92 / 2e-23 fucosyltransferase 11 (.1) Potri.019G082200 [exp] 75 / 3e-14 AT1G71990 587 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.013G111200 [exp] 73 / 9e-14 AT1G71990 576 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00852 [flax] [poplar] Glyco_transf_10 Glycosyltransferase family 10 (fucosyltransferase) C-term
Representative CDS sequence Show only first row Show all	>Lus10019855 pacid=23164040 polypeptide=Lus10019855 locus=Lus10019855.g ID=Lus10019855.BGIv1.0 annot-version=v1.0 ATGGGTATCCTCTCGAATCTGAGGAACCCGAGGAATCCAGAAGATGGGTTGTTGATCTCATCAATTTCTTCTTCTTCTTCACCAACAAGCAAAAGGAAAT GGTCAAACTTTCTGCCGGTTTTCATCGCCCTTGTGGTCCTAGTGGAGATCGCCTTTCTGGGTCGTCTGGACATGGCTAAGAACGCTGCTGCTAAGGTTGA TTCTTGGGCAGACAGCGTCTTGTACAACAGGTCGCCTCCTGTTTTGAAAGAGGAGGCCGCTGCTACTTTACCTAGGATTGATGATGGAGTTTTAGGGTTG GAGAGCTGTGAGGATTGGTTGGAGAGGGAGGATTCTGTCACTTATTCTAGGGATTTTGATAAAGATCCCATCTTGGTCGCCGGCGCTGAGAAGGAGTGGA GAGCTTGTGCTGTGGGGTGTCAGTTCGGATATGACTCCAGCAAAACTCCTGATGCAGTATTCGGTAGATTGAGCGATCCGTCTGGAATTCTGAGCGTGCA TAGATCGATGGAATCGGCTCAGTATTATCCGGAGAACGATATTGCTACTGCACGACGAAGGGGATACCGTGTAGTAATGACTACAAGTCTATCCTCAGAT GTGCCGGTTGGATATTTCTCCTGGGCGGAGTACGATATTATGGCACCTGTGCAGCCAAAGACCGAGAAAGCCCTTGCAGCGGCATTCATCTCAAACTGTG GTGCCCGGAACTTCCGTCTTCAAGTCCTTGACGGGCTCGAGAAACTGAAGATCCCAATCGATTCTTACGGTGCTTGCCACCGGAATCGTGACGGAAGAGT GAACAAAGTGGAGGCTCTCAAGCACTACAAATTCAGCCTGGCTTTTGAGAATTCTAACGAAGAGGATTATGTTACTGAGAAATTCTTCCAGTCTCTCGTA GCTGGTACAATTCCGGTGGTGGTTGGTGCTCCGAACATCCAAGATTACGCTCCCGGGCCGAGTTCTGTATTACACATCAAGTCCCTCGAAGATATTGACA CTGTTGCTAAGACCATGAACCATCTGGCCGGAAACTCTACCGCTTATAATCAGTCACTCAGGTGGAAAGTGGACGGTCCATCGGAATCCTTCAAGGCTCT AGTGGATATGGCAGTTGTGCATTCATCTTGCCGTCTTTGCATCCACCTAGCAACTATGGTCCGCGAGAAAGAAGCAAGTAGTTCAGCATTCAAGAAACGG CCCTGCAGGTGCACGAGAGGGCCGGAGATTCTACACCATTTGTACGTAAGGGAACGAGGAAGGTTCAAAATGGAGTCCATATTCCTAGGGTCGGGGAACT TGACGATGGAGGCACTGGAGGAGGAGGTGCTGAAAAAGTTCAAGTCTTTGAAACACGTACCCATCTGGAAAGGAGAAAGGCCCGAAAGCATAAGAGGTGG AGACGATGAGTACAAGGTGTACAGAGTGTATCCGGTAGGGTTAACGCAGAGGGAAGCGCTCTACTCGTTCAGATTTACGAATATCGACTTGCAGAATCAC TTGGAGGCGAATCCGTGCCCGAAGCTAGAGGTCGTATTTGTGTAG
AA sequence Show only first row Show all	>Lus10019855 pacid=23164040 polypeptide=Lus10019855 locus=Lus10019855.g ID=Lus10019855.BGIv1.0 annot-version=v1.0 MGILSNLRNPRNPEDGLLISSISSSSSPTSKRKWSNFLPVFIALVVLVEIAFLGRLDMAKNAAAKVDSWADSVLYNRSPPVLKEEAAATLPRIDDGVLGL ESCEDWLEREDSVTYSRDFDKDPILVAGAEKEWRACAVGCQFGYDSSKTPDAVFGRLSDPSGILSVHRSMESAQYYPENDIATARRRGYRVVMTTSLSSD VPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCGARNFRLQVLDGLEKLKIPIDSYGACHRNRDGRVNKVEALKHYKFSLAFENSNEEDYVTEKFFQSLV AGTIPVVVGAPNIQDYAPGPSSVLHIKSLEDIDTVAKTMNHLAGNSTAYNQSLRWKVDGPSESFKALVDMAVVHSSCRLCIHLATMVREKEASSSAFKKR PCRCTRGPEILHHLYVRERGRFKMESIFLGSGNLTMEALEEEVLKKFKSLKHVPIWKGERPESIRGGDDEYKVYRVYPVGLTQREALYSFRFTNIDLQNH LEANPCPKLEVVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10019855 [exp]	0	1
AT4G19110			Protein kinase superfamily pro...		Lus10033278 [exp]	8.0	0.8606
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	8.4	0.8753
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	11.7	0.7964
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	14.1	0.8293
AT5G55060			unknown protein		Lus10021546 [exp]	15.1	0.8684
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	16.0	0.8679
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	16.7	0.8699
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10019641 [exp]	17.0	0.7682
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026393 [exp]	18.9	0.8252
AT5G52580			RabGAP/TBC domain-containing p...		Lus10038091 [exp]	19.6	0.8065

Compare expression of checked genes

Lus10019855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.