Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15620 554 / 0 ATHNIR, NIR1 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014059 [exp] 620 / 0 AT2G15620 960 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1) Lus10027360 [exp] 58 / 1e-08 AT5G04590 985 / 0.0 sulfite reductase (.1) Lus10009951 [exp] 50 / 4e-06 AT5G04590 1020 / 0.0 sulfite reductase (.1) Lus10030131 [exp] 49 / 7e-06 AT5G04590 1017 / 0.0 sulfite reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140800 [exp] 560 / 0 AT2G15620 1021 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1) Potri.009G101600 [exp] 417 / 1e-144 AT2G15620 430 / 2e-148 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03460 [flax] [poplar] NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain PF01077 [flax] [poplar] NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
Representative CDS sequence Show only first row Show all	>Lus10019856 pacid=23163966 polypeptide=Lus10019856 locus=Lus10019856.g ID=Lus10019856.BGIv1.0 annot-version=v1.0 ATGTCTTCTTTTTCAGCCAAGTTCATCGCCCCACCTTTCCCCTCCATTTCTTCCGCCGCCAGGAGCAGCAGACCGTCCAAAATGTTCGCTGCCACAACTC CGGCCGCAGTTGAAGCTGTTGTTGACGCAGAGAGGTTGGAGCCGAGGGTGGAGGAGAGAGCAGGGTACTGGGTGTTGAAGGAGAAGTTCAGACAAGGGAT CAACCCACAAGAGAAAGTCAAATTGGGCAAAGAACCCATGACTCTGTTCACCGAGAATGGTATTGACGACCTCGCTAAGCTCTCCATGGAACAGATCGAC GCCGATAAGCTCAGTAAAGAGGATATCGACGTCCGTCTCAAGTGGCTCGGCCTCTTCCACCGCAGGAAGCATCAGTATGGAAGGTTTATGATGAGATTGA AGCTGCCAAATGGGGTGACGACTAGCGAACAAACGAGATACTTAGCGAGCGTCATCAGGAAGTACGGCAAAGAAGGATGTGCCGACGTTACCACCCGGCA GAACTGGCAGATTCGAGGGGTTGTGCTACCCGATGTGCCGGAGATACTCAAAGGACTAGCCGGAGTTGGATTGACGAGCTTGCAGAGTGGGATGGACAAT GTGAGGAATCCGGTTGGGAATCCGGTCGCCGGAATCGACCCCGAAGAGATCGTTGACACCAGGCCTTACACCAACTTGCTGTCCCAGTTCATCACTGCCA ATTCCGCCGGCAATACTGCCCTTACCAATTTGCCAAGGAAATGGAATGTGTGTGTTGTGGGTTCACATGATCTATATGAGCATCCTCACATCAACGATCT AGCATATATGCCGGCTACCAAGGATGGGAGATTTGGGTTCAACATGCTGGTTGGTGGGTTCTTTAGTCCCAAGAGATGTGAAGAGGCGATTCCTCTCGAT GCTTGGGTGGCGGCCGAGGATGTCATTCCTTCGTGTAAAGCGGTTCTGGAAGCGTTCAGGGATCTCGGGTTTAGAGGAAACCGACAAAAGACTAGGATGA TGTGGCTCATTGATGAACTCGGGGCGCTCCGCCTCACGGTGGAACAAAACATCATCATCCCGAACGTCGACAACTCCAAGATCGAATCTTTACTAAAAGA GCCATTGCTAATCGAGAGGTTTTCCCCGGAACCACCGATCCTCATGAAAGGTCTAGTCTCGTGCACCGGGAGCCAATTCTGCGGGCAAGGAATCATCGAG ACGAAGGCGAGGGCAATGAAGGTGACGGAGGAGGTGCAACGAATCGTGTCAGTGGATCGCCCGGTGAGGATGCACTGGACAGGGTGCCCCAACACATGCG GCCAAGTTCAAGTGGCGGACATAGGATTCATGGGATGCATGGCTAGGGACGAGAACGGGAAGCCCTGTGAGGGAGTGGATGTTTTCTTGGGTGGCAAGAT CGGGAGTGATTCGCACTTGGGGGAGATTTACAAGAAGAGTGTGCCTTGCAAGGATTTGGTGCCGGTGGTCGTCAACATCTTGGTTGAGAAATTTGGAGGC GTTGTAAGGGAGAGGGAGGAAGTTGAAGAGTAG
AA sequence Show only first row Show all	>Lus10019856 pacid=23163966 polypeptide=Lus10019856 locus=Lus10019856.g ID=Lus10019856.BGIv1.0 annot-version=v1.0 MSSFSAKFIAPPFPSISSAARSSRPSKMFAATTPAAVEAVVDAERLEPRVEERAGYWVLKEKFRQGINPQEKVKLGKEPMTLFTENGIDDLAKLSMEQID ADKLSKEDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSEQTRYLASVIRKYGKEGCADVTTRQNWQIRGVVLPDVPEILKGLAGVGLTSLQSGMDN VRNPVGNPVAGIDPEEIVDTRPYTNLLSQFITANSAGNTALTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNMLVGGFFSPKRCEEAIPLD AWVAAEDVIPSCKAVLEAFRDLGFRGNRQKTRMMWLIDELGALRLTVEQNIIIPNVDNSKIESLLKEPLLIERFSPEPPILMKGLVSCTGSQFCGQGIIE TKARAMKVTEEVQRIVSVDRPVRMHWTGCPNTCGQVQVADIGFMGCMARDENGKPCEGVDVFLGGKIGSDSHLGEIYKKSVPCKDLVPVVVNILVEKFGG VVREREEVEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10019856 [exp]	0	1
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10005047 [exp]	2.2	0.9321
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	9.0	0.8661
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	14.1	0.9147
AT1G70780			unknown protein		Lus10019143 [exp]	14.4	0.9047
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	18.1	0.9110
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10042283 [exp]	22.6	0.8923
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	23.8	0.8985
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	26.8	0.8925
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	28.5	0.8790
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	31.3	0.8965

Compare expression of checked genes

Lus10019856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.