Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15460 402 / 8e-142 Ribosomal RNA processing Brix domain protein (.1) AT1G52930 392 / 1e-137 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014058 [exp] 547 / 0 AT3G15460 442 / 3e-157 Ribosomal RNA processing Brix domain protein (.1) Lus10002403 [exp] 432 / 2e-153 AT3G15460 519 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10027900 [exp] 431 / 5e-153 AT3G15460 512 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122200 [exp] 407 / 2e-143 AT3G15460 517 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Potri.001G403100 [exp] 402 / 1e-141 AT3G15460 514 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10019857 pacid=23164022 polypeptide=Lus10019857 locus=Lus10019857.g ID=Lus10019857.BGIv1.0 annot-version=v1.0 ATGGCAAAGAAACGAAAGCATAGCGAGACGGACGCCGCTGCGGCGGAGACACCTCAAAATAAAGAGGAAGCTTCACCGGAGGCTGCAGATGTAGGCGAGG ACGAAGAGGATGAAGCTCGGCATCATCATCCTCGGACTTTCAGGAATAAAGAGAAAGTCTTGGTCACTTGCTCCCGCCGAATCAATTTCAGGTATCGACA CTTAATGTTGAATGTGGTTTCCCTGCTGCCTCATTGTAAGAAAGATAGCAAGATCGAATTGAAAAGCGATAAAGGGGTTGCGCTTAGTGAGATGGTTGAG CTAAATAGCTGCTCTTCCTGTCTATTCTTCGAGAGCAGGAAGAAGAAAGATTTGTATTTGTGGATGGCAAAGTGTCCTAGTGGCCCATCTGTGAAGTTCC TAGTTAATGCTGTGCATACGACGGAGGAGCTGAAGTTCGGTGGGAGTAATCTATTGGGAAAGCGACCACTTTTGACATTCTCGTCGAATTTTGATCAAGA TGCTCATTGGAAGCTTTTGAAGGAAATGATAACTCAGATATTTGGAACTCCGAAAGACTGCAGGAAATCTAAGCCATATCACGATCATGTCCTTGTTTTC TCCATTGTTGATGATCATATATGGTTCCGCAATTACCAGATATCACCTCCTCACGACAATTCCGATAAAGTTATTGACATAGGCCTGGAGAAGATGACCC TTATCGAGGTTGGTCCAAGATTTTGTATGAACCCTATCAAGATATTCGGCGGCAGTTTTGGAGGCCCGACTCTGTATGAGAATCCATTCTACATATCTTG TAGCAAGGTAGGGGCAACGGAGAAGCGGAAGGGTGCTGGGAAGTACGCGAAGAAAGTGAAAGCCAAGACTAGAATGAAGGTGCACGAGCTATCGAAACAG TTGGAGACTAACGAGTTTTCCGAGGCGTGGAAGGACGAATGA
AA sequence Show only first row Show all	>Lus10019857 pacid=23164022 polypeptide=Lus10019857 locus=Lus10019857.g ID=Lus10019857.BGIv1.0 annot-version=v1.0 MAKKRKHSETDAAAAETPQNKEEASPEAADVGEDEEDEARHHHPRTFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDSKIELKSDKGVALSEMVE LNSCSSCLFFESRKKKDLYLWMAKCPSGPSVKFLVNAVHTTEELKFGGSNLLGKRPLLTFSSNFDQDAHWKLLKEMITQIFGTPKDCRKSKPYHDHVLVF SIVDDHIWFRNYQISPPHDNSDKVIDIGLEKMTLIEVGPRFCMNPIKIFGGSFGGPTLYENPFYISCSKVGATEKRKGAGKYAKKVKAKTRMKVHELSKQ LETNEFSEAWKDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15460			Ribosomal RNA processing Brix ...		Lus10019857 [exp]	0	1
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	2.0	0.7836
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	7.6	0.7891
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	14.6	0.7834
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10015414 [exp]	18.8	0.7710
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10022991 [exp]	19.4	0.7822
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10008853 [exp]	30.7	0.7807
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	39.3	0.7759
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10040340 [exp]	48.9	0.6846
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	54.1	0.7585
AT5G40460			unknown protein		Lus10022268 [exp]	63.4	0.6922

Compare expression of checked genes

Lus10019857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.