Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19270 597 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G45340 501 / 2e-175 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 501 / 4e-175 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 462 / 1e-159 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT1G05160 231 / 5e-70 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 221 / 4e-66 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G05690 213 / 2e-63 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G30180 205 / 2e-60 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 205 / 3e-60 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT2G42850 204 / 1e-59 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042652 [exp] 555 / 0 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 555 / 0 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 516 / 1e-180 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 489 / 1e-170 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10033308 [exp] 476 / 4e-165 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 474 / 1e-164 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10016515 [exp] 426 / 2e-145 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10040785 [exp] 333 / 1e-102 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10037273 [exp] 296 / 3e-96 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140900 [exp] 610 / 0 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 603 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G029100 [exp] 597 / 0 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 583 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 502 / 1e-175 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.001G242600 [exp] 479 / 4e-166 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.009G033900 [exp] 474 / 1e-164 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G069600 [exp] 226 / 3e-68 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.002G060700 [exp] 222 / 1e-66 AT2G42850 582 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Potri.001G003000 [exp] 221 / 3e-66 AT5G36110 389 / 3e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019858 pacid=23164083 polypeptide=Lus10019858 locus=Lus10019858.g ID=Lus10019858.BGIv1.0 annot-version=v1.0 ATGGATATTGTGTCCATAGTCTTCATCTACTCATGCCTTCTCCTCTCTAGCCTCCTCTTTTACCCTTTCCTCCTCAGAAACAAACATCTCTTCGCTATGA AATTCAACACCAAAATCAACAAGATCAACAAGAACAGGAACAAGAAGAATCATCTCAAGCTCCCTCCTGGCTCAATGGGATGGCCTTACTTTGGTGAAAC CCTCCAACTCTACTCTCAACACCCCAATCACTTCTTCTCCACCAAGCACAAAAGATACGGGGAGGTATTCAAGACGAGCATCTTGGGATGCTCGTGCGTG ATGTTGGCTAGCCCCGAGGCGGCCAGGTTTGTTCTCATTACGAATGCTCACCTCTTCAAGCCGACTTACCCCAAGTCGAAGGAAGAGCTCATCGGGAAAT GGGCTCTCTTCTTCCACCAGGGTGATTACCATTCTACCCTTAAGAAGCTTGTTTGTGCCTCGCAATCGCCCGACCGTCTACGCAATCTCACTCCCCGTAT AGAATCTCTAGCCATCTCTGCCTTGGACTCTCTTGTGTCAAGTAGCAGTTCAGCTAGCAGTGTCTCCACATTTCAAGAATTAAAGAAGTTTTCTTTCGAC GTCGGCATTCTGGCCATCTTTGGTGAACTAGACATCCGATACAAGGAGAAGTTGCATCATAATTACATGATTATCGAAAAGGGCTACAATTCTTTCCCCA CCAAAATTCCTGGAACTCCTTATTCCACAGCTCTCTCGGCAAGGAAGAGGCTAGGGGAGATATTGAGCGAGATAATAAGGGAGAGGAAGGAGAAGAAAAT TGTAGAGAAGGACTTGTTAGCTCAACTACTTAACTTCAAGGACGAAAACGGAGAAATTTTGACCGACGAACAAATTTCCGATAACATCATCGGAGTTGTG TTTGCCGCCCAGGACACTACGGCCAGTGTTTTGACATGGGTGCTTAAGTATCTCAACGACGATCACAAGCTACTTGAAGACGTTAAGGCAGAGCAGATGG CGATTTATGAAGCTAATGACCGAGGCAGAAAGTGTTTAACATGGCCACAAACAAGGAAGATGGCACTTACACATAGGGTGATTTTGGAGAGTTTACGGAT GGCAAGTATCATATCGTTTACATTCAGAGAAGCAGTAGCCGATGTCGAATACAAAGGATACTTGATACCAAAAGGGTGGAAAGTGATGCCACTGTTCAGG AACATTCATCACAGCCCTGAATTTTTCTCTGATCCTCAAAATTTTGACCCTTCTAGATTCCAGGTTCCTATAGAGGGAAATACATTCATGCCATTTGGGA GTGGATCTCATTCTTGCCCTGGAACTCAACTTGCCAAACTTCAAATCCTCATCTTCCTCCATCACCTCCTTACTAATTTCAGGTGGGAAGTGATGGGGTG GGGAAGTGGAGTTGAATATGGTCCATTTCCAATACCTTCCAGAGGGTTGCCGGCTAAGTTTTGGAAAGTTCCACGGTTTGGTTCAACAAGCCATCAACAT AGATTACCTTAA
AA sequence Show only first row Show all	>Lus10019858 pacid=23164083 polypeptide=Lus10019858 locus=Lus10019858.g ID=Lus10019858.BGIv1.0 annot-version=v1.0 MDIVSIVFIYSCLLLSSLLFYPFLLRNKHLFAMKFNTKINKINKNRNKKNHLKLPPGSMGWPYFGETLQLYSQHPNHFFSTKHKRYGEVFKTSILGCSCV MLASPEAARFVLITNAHLFKPTYPKSKEELIGKWALFFHQGDYHSTLKKLVCASQSPDRLRNLTPRIESLAISALDSLVSSSSSASSVSTFQELKKFSFD VGILAIFGELDIRYKEKLHHNYMIIEKGYNSFPTKIPGTPYSTALSARKRLGEILSEIIRERKEKKIVEKDLLAQLLNFKDENGEILTDEQISDNIIGVV FAAQDTTASVLTWVLKYLNDDHKLLEDVKAEQMAIYEANDRGRKCLTWPQTRKMALTHRVILESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFR NIHHSPEFFSDPQNFDPSRFQVPIEGNTFMPFGSGSHSCPGTQLAKLQILIFLHHLLTNFRWEVMGWGSGVEYGPFPIPSRGLPAKFWKVPRFGSTSHQH RLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10019858 [exp]	0	1
					Lus10037542 [exp]	1.0	0.6615
AT3G47110			Leucine-rich repeat protein ki...		Lus10030854 [exp]	3.0	0.6503
AT3G07600			Heavy metal transport/detoxifi...		Lus10016063 [exp]	13.9	0.6513
					Lus10024160 [exp]	14.1	0.6044
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	16.7	0.6086
					Lus10019699 [exp]	18.5	0.5981
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	22.5	0.6047
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	25.3	0.6015
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002610 [exp]	26.9	0.6039
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	31.8	0.5939

Compare expression of checked genes

Lus10019858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.