Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19260 342 / 2e-118 LOH2, LAG1 HOMOLOG 2, LAG1 HOMO, LAG1HOMOLOG2 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) AT1G13580 231 / 1e-74 LOH3, LAG13 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) AT3G25540 221 / 5e-71 LAG1 LONGEVITY ASSURANCE GENE 1, TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G26200 192 / 1e-59 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014055 [exp] 505 / 0 AT3G19260 316 / 2e-108 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Lus10029096 [exp] 222 / 3e-71 AT1G13580 487 / 2e-175 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013063 [exp] 219 / 4e-70 AT1G13580 469 / 3e-168 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030918 [exp] 218 / 3e-69 AT1G13580 490 / 4e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030571 [exp] 218 / 4e-69 AT1G13580 491 / 2e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013494 [exp] 187 / 2e-57 AT1G13580 381 / 1e-133 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10007964 [exp] 185 / 9e-57 AT1G13580 383 / 3e-134 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G141000 [exp] 366 / 4e-128 AT3G19260 364 / 2e-127 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.009G101800 [exp] 359 / 2e-125 AT3G19260 334 / 2e-115 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.015G055000 [exp] 217 / 3e-69 AT1G13580 378 / 3e-132 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.010G134700 [exp] 216 / 5e-69 AT1G13580 444 / 1e-158 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.008G113900 [exp] 216 / 1e-68 AT1G13580 438 / 4e-156 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10019859 pacid=23164034 polypeptide=Lus10019859 locus=Lus10019859.g ID=Lus10019859.BGIv1.0 annot-version=v1.0 ATGGATGCCGTCGGGATCTGGAGCCGCGATATCGGTTCGCCGGAACCCTGGCATTCCGTCGTCGCTGTTGTCTTCGCTTTCGGTCTCTATGGTGCTAGGT TCCTGCTCGATAAATTCATCTATCGTGGTTTGAGTATTTGGTTGTTGGGAAAGAGAGCTGCTTCACCAAAGATAGATGAAGTAACAAAAGCTACAATTGT TAAATGTTCCGAGTCTATGTGGAAGCTAACATACTATGCCGCTCTTGAAGTTTATATTCTGAAAATTCTGTATGAAGAGCCATGGTTCTGGGATACAAAA CTTTACTTCAAAGGCTTGCCGAATCAAGAATTGAAGCTTTCTATTATGCTATATTACATGTGCGAATGTGGATTCTACCTTTACAGTATCCCTGCTCTGG TATTGTGGGAAACGAGAAGAAAAGATTTTGCTGTGATGATGTCGCATCATGTAATTACAGTTGCATTGATTGGAATCTCCTACGTTACAAGCTTTTTCCG TATCGGAACAATCATCCTTGCCCTCCATGATGCAAGTGATGTATTCTTAGAAGCTGCGAAAATTTGCAACAAAACTCGGAGGGAAGTTGGAGCAAGCATT TGCTTCGGCTTATTTGCTGCGTCGTGGCTCATTCTGCGATTAATATTCTTTCCGTTTTGGGTGATACATAGTACAAGCCATGACCTTGTGGAGTACTTGG ATTTAAGACGGTGGTATCCGAGATCACTGTACTATGGGTTCAACACGTTGTTGTTCACTTTGCTTATATTCCACATCTACTGGTGGATTCTGATATGGGC AATGATAAAAAGGCAACTACTAAACAGTGGAAAGGTCGAAGGAGATATAAGATCTGGTAAGGCCATGGTGCTTTAG
AA sequence Show only first row Show all	>Lus10019859 pacid=23164034 polypeptide=Lus10019859 locus=Lus10019859.g ID=Lus10019859.BGIv1.0 annot-version=v1.0 MDAVGIWSRDIGSPEPWHSVVAVVFAFGLYGARFLLDKFIYRGLSIWLLGKRAASPKIDEVTKATIVKCSESMWKLTYYAALEVYILKILYEEPWFWDTK LYFKGLPNQELKLSIMLYYMCECGFYLYSIPALVLWETRRKDFAVMMSHHVITVALIGISYVTSFFRIGTIILALHDASDVFLEAAKICNKTRREVGASI CFGLFAASWLILRLIFFPFWVIHSTSHDLVEYLDLRRWYPRSLYYGFNTLLFTLLIFHIYWWILIWAMIKRQLLNSGKVEGDIRSGKAMVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Lus10019859 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Lus10024926 [exp]	78.8	0.6109
					Lus10001500 [exp]	106.9	0.6452
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10007557 [exp]	289.9	0.6129

Compare expression of checked genes

Lus10019859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.