Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19240 873 / 0 Vacuolar import/degradation, Vid27-related protein (.1) AT4G33400 772 / 0 Vacuolar import/degradation, Vid27-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014053 [exp] 1161 / 0 AT3G19240 900 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10042656 [exp] 812 / 0 AT4G33400 903 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10021729 [exp] 809 / 0 AT4G33400 905 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102000 [exp] 948 / 0 AT3G19240 877 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.004G141300 [exp] 924 / 0 AT3G19240 893 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.014G029600 [exp] 815 / 0 AT4G33400 894 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.002G126500 [exp] 810 / 0 AT4G33400 914 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08553 [flax] [poplar] VID27 VID27 C-terminal WD40-like domain
Representative CDS sequence Show only first row Show all	>Lus10019860 pacid=23163971 polypeptide=Lus10019860 locus=Lus10019860.g ID=Lus10019860.BGIv1.0 annot-version=v1.0 ATGGGCACTTCTCAGAGCCGTGAAGGCGAGGAGCTCTCCGATTCCGACGACTACCTCTCCGAAACAGAGGATTACGACGAGGAAGATGAGGAAGAAGAGT TTCACTACGATGCTGTTGAGCGACAAGAGACGCCTCAGACGACTTCCTCTCACCGGACGATCGACGAGATCGACACCAAGCTGAAATCCTTGAAGCTCAA ATACGGCGAATCCGCGCAGGGAGTAACCGGCGACCGTCGCGTCAAGCTGTACCTCCACATCGGAGGAAACTCTCCCAAGGCGAAGTGGATCGTTTCGGAA AAGACGACGTCGTACAGCTTCGTATTGAAGGATCCTTCTGATCGCGAGGACGAAGGAGGTTCTTCCGACAGTGGAGGTAATTCTTTATGGTTTCTGGTTG TCGGGACTAAAGTTAGGGCTAGGGTTTCGACGGAGATGCAATTGAAGATGTTTGCGGATCAGAGGAGGGTTGATTTCGTGGATAGTGGCGTTTGGGCGTT GAAGTTTCCCACCGATGAGGAGTATAGGAGGTTTGTGGAGGAGTATCAGGATTGCTTGTTTGAAAATGTTTACGGGGTTAAGGCCACGGATCAGAATAAG GTGAAGGTGTATGGAAAGGATTTTCTAGGGTGGGCTAAGCCGGAAATGGCCGACGATTCGATGTGGGAGGATGCGGATGATGGAGAAGAGAAGTATACTC CTGTTAGAGGGAATCAGGACTTGATGGAGGAATTCGAGGAGGCCGCGAATGGTGGGGTTCATAGCTTAACTTTAGGTGCTATGGAGAATAGTTTCCTGGT GAATGATTTGGGCGTTCAGGTTTATAGGAACTATGAGAAGGGTATCCATGGTAAAGGGATTTGTGTGAATTTTGATCAAGGGGGTAGTGGATCTAGCTTG GCGAGATCTACACCGAAGAAAGGGATGCTCATGAGAGCGGAGACGAATATGATGCTGATGAGCCCGATGAAGGAAGGAAAGCCACACTCTACAGGGATTA AACAGCTTGACATTGAGTCGGGGAAGATTGTGACGGAGTGGAAATTTGAGAAAGATGGGACGGAAATTACGATGAGGGATATTATAAATGATAACAAAGG GTCTCAGTTGGATCCTTCTGAGAGCACGTTCTTGGGGTTGGATGATAACAGGCTGTGTCAATGGGACATGAGAGATAAGAGAGGCATCGTTCAGGATATT GACTCGCCTGTTCTGCAATGGAGTGATGGGCATCAATTCTCGAGAGGGACAAATTTTCAGTGTTTTGCAAGTACTGGTGATGGGTCCATTGTCGTTGGAT CACTTGATGGGAAGATCAGGCTATATTCTAGGAGATCAATGAGACAGGCTAAGACCGCTTTCCCGGGGCTTGGTTCACCCATCACTCATGTGGATGTTAC ATATGATGGAAAGTGGGTTTTGGGGACTACTGATACTTACTTGATCCTCATCTGCACCCTGTTTACGGACAAGGATGGTAAGACTAAGACTGGATTTGGC GGTCGTATGGGGAATAAAATACCAGCTCCGAGAATGCTCAAGTTGATTCCTTTGGATTCGCATTTGGCTGGTGGCAATAACAAGTTTCACGGCGGCCATT TTTCATGGGTCACGGAGAACGGTAGACAAGAGCGCCACATCGTGGCAACAGTGGGGAAGTTCAGCGTGATATGGGACTTCCACCAGGTGAAGAACACTGC ACACGGATGCTACAAGAACCAGCAAGGCCTGAAGAGCTGCTACTGCTACAAGATCGTGCTCAAGGACGAGTCAATCGTGGAAAGCCGGTTCATGCACGAC AACTACGCCTCTACCAACTCCCCGGAAGCTCCTTTAGTCGTGGCGACGCCAATGAAAGTCAGCTCCTTCAGCCTCTCCGGGAAGCGTGGTTGA
AA sequence Show only first row Show all	>Lus10019860 pacid=23163971 polypeptide=Lus10019860 locus=Lus10019860.g ID=Lus10019860.BGIv1.0 annot-version=v1.0 MGTSQSREGEELSDSDDYLSETEDYDEEDEEEEFHYDAVERQETPQTTSSHRTIDEIDTKLKSLKLKYGESAQGVTGDRRVKLYLHIGGNSPKAKWIVSE KTTSYSFVLKDPSDREDEGGSSDSGGNSLWFLVVGTKVRARVSTEMQLKMFADQRRVDFVDSGVWALKFPTDEEYRRFVEEYQDCLFENVYGVKATDQNK VKVYGKDFLGWAKPEMADDSMWEDADDGEEKYTPVRGNQDLMEEFEEAANGGVHSLTLGAMENSFLVNDLGVQVYRNYEKGIHGKGICVNFDQGGSGSSL ARSTPKKGMLMRAETNMMLMSPMKEGKPHSTGIKQLDIESGKIVTEWKFEKDGTEITMRDIINDNKGSQLDPSESTFLGLDDNRLCQWDMRDKRGIVQDI DSPVLQWSDGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSRRSMRQAKTAFPGLGSPITHVDVTYDGKWVLGTTDTYLILICTLFTDKDGKTKTGFG GRMGNKIPAPRMLKLIPLDSHLAGGNNKFHGGHFSWVTENGRQERHIVATVGKFSVIWDFHQVKNTAHGCYKNQQGLKSCYCYKIVLKDESIVESRFMHD NYASTNSPEAPLVVATPMKVSSFSLSGKRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19240			Vacuolar import/degradation, V...		Lus10019860 [exp]	0	1
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	3.0	0.8081
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	14.8	0.8063
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	15.5	0.7373
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	17.6	0.8000
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	25.8	0.7512
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	26.2	0.7907
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	28.6	0.7834
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	29.4	0.7322
AT1G17620			Late embryogenesis abundant (L...		Lus10003824 [exp]	31.8	0.7634
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	42.1	0.7274

Compare expression of checked genes

Lus10019860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.