Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15680 223 / 1e-74 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT5G37770 125 / 9e-37 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G24620 124 / 4e-36 EF hand calcium-binding protein family (.1) AT1G66400 117 / 1e-33 CML23 calmodulin like 23 (.1) AT1G18210 113 / 5e-32 Calcium-binding EF-hand family protein (.1.2) AT1G73630 107 / 1e-29 EF hand calcium-binding protein family (.1) AT5G17470 103 / 2e-28 EF hand calcium-binding protein family (.1) AT5G42380 103 / 9e-28 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1) AT2G36180 101 / 2e-27 EF hand calcium-binding protein family (.1) AT1G05990 100 / 3e-27 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014050 [exp] 347 / 1e-123 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10028913 [exp] 130 / 1e-38 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10004330 [exp] 129 / 4e-38 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10018012 [exp] 124 / 6e-36 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 116 / 5e-33 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 115 / 2e-32 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 114 / 4e-31 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10024574 [exp] 107 / 1e-29 AT1G24620 143 / 4e-44 EF hand calcium-binding protein family (.1) Lus10009564 [exp] 99 / 3e-26 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102500 [exp] 245 / 1e-83 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.007G042900 [exp] 180 / 8e-58 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.010G107100 [exp] 134 / 1e-39 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 128 / 2e-37 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.017G126200 [exp] 127 / 2e-37 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.015G039500 [exp] 125 / 8e-37 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.004G089400 [exp] 125 / 1e-36 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.012G048200 [exp] 116 / 3e-33 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.014G070700 [exp] 111 / 9e-31 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.001G332900 [exp] 100 / 6e-27 AT1G76650 115 / 2e-33 calmodulin-like 38 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10019863 pacid=23164070 polypeptide=Lus10019863 locus=Lus10019863.g ID=Lus10019863.BGIv1.0 annot-version=v1.0 ATGTCAAACGGTAGCTTTCTGGAGTTCCAATACAAGCTTTCCAGGAACAAGTTCCTGCGCAAGCCAACTCGAATATTGTCATCTCGCAGCACCAGCAGCC GGCAGAACTCTGCCTTACCGACGACGGTGATGCAGCCGAGTCTGACAGAGATGAGGCAAGTCTTCAACAAATTCGATTCAAACGGAGATGGTAAAATCTC TCGACACGAGTACCGGGCGATTCTGAGAGCTCTAGGACAGCAGTCCATGGTTGCAGATGTGCAGCATATTTTCAAGGTGGCCGACTTGGACGGAGATGGG TTCATAGATTTTAACGAGTTTGTCGAAGCGCAGAAGAAAGAAGGAGCTGGAGTTAGGATGATGGATATACAGAGTGCTTTCCGGACGTTTGATGTGAATG GAGATGGAAGGATAAGCGCGGAGGAGTTGCTGCAGGTTCTTCGACAGCTCGGAGAGCGCTGTACCCTTGACGATTGCCGGAAAATGGTTAGGGCGGTAGA TAACGACGGGGATGGGTTGGTGAACATGGACGAGTTCACGACCATGATGACTCGAACTCTCGTGCACAATTAA
AA sequence Show only first row Show all	>Lus10019863 pacid=23164070 polypeptide=Lus10019863 locus=Lus10019863.g ID=Lus10019863.BGIv1.0 annot-version=v1.0 MSNGSFLEFQYKLSRNKFLRKPTRILSSRSTSSRQNSALPTTVMQPSLTEMRQVFNKFDSNGDGKISRHEYRAILRALGQQSMVADVQHIFKVADLDGDG FIDFNEFVEAQKKEGAGVRMMDIQSAFRTFDVNGDGRISAEELLQVLRQLGERCTLDDCRKMVRAVDNDGDGLVNMDEFTTMMTRTLVHN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10019863 [exp]	0	1
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	3.5	0.9249
AT1G52342			unknown protein		Lus10043217 [exp]	3.6	0.8665
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	7.5	0.8869
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	10.6	0.8931
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10036758 [exp]	11.2	0.8734
AT1G27990			unknown protein		Lus10015763 [exp]	11.8	0.8713
AT1G10380			Putative membrane lipoprotein ...		Lus10037237 [exp]	15.1	0.8671
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	16.1	0.8618
					Lus10003556 [exp]	16.7	0.8802
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	17.9	0.8093

Compare expression of checked genes

Lus10019863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.