Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15690 471 / 1e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32450 281 / 1e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G25580 259 / 2e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 257 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 244 / 1e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G23330 246 / 8e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 243 / 1e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 242 / 9e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 238 / 3e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 243 / 6e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014049 [exp] 974 / 0 AT2G15690 478 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032688 [exp] 385 / 2e-128 AT2G15690 375 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008570 [exp] 382 / 1e-127 AT2G15690 375 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041867 [exp] 327 / 1e-103 AT2G25580 447 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028413 [exp] 320 / 5e-101 AT2G25580 447 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 258 / 9e-77 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 253 / 4e-76 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10040577 [exp] 243 / 5e-75 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 248 / 3e-74 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058300 [exp] 595 / 0 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G116600 [exp] 343 / 8e-110 AT2G25580 452 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G038900 [exp] 278 / 1e-87 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 276 / 3e-82 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 253 / 2e-75 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 249 / 5e-74 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 251 / 6e-74 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 250 / 1e-73 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 249 / 3e-73 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 244 / 5e-73 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019864 pacid=23163989 polypeptide=Lus10019864 locus=Lus10019864.g ID=Lus10019864.BGIv1.0 annot-version=v1.0 ATGGCGTTTCGTTTGGCCTTACATCGCTCGCGGACGAGGCTCTCTTCTTCTTCGTCATCATCCGTCTTCAAGTTACGGTTCCTTACACTAAGCACTTACG CGGCTCCTAATGAGTTCCACGCTCCGCCGTCTCAATCCGAGCCTAGGGTTTTCCCAGGCGAGAGGCGTACTGATCCGAATATCCGCTGGGATAACAGAAT CCCTCCTCCTCCTCCACAAATGAATTCGCCGCAGCAACAGCAGGGATATCATAATCATAATCATAACCAGTGGCCACCTCAGCAAAATCCTAATCAGATG AATTATCCGAGACAGGATATGAATCAGGGTTATCCGAGTAGGGGATATCCTAACCCGGCTCAGGGTCACATTAATCCAGTCCAGGGATATCCTAATCCAC CGCAACACCACCAGCCGCCGCCGCAGCAGCGTGGTCCTGGCAATTGGCATCCTCAGAATGGCCAGAGCTATCCTCAGCACAACAATGTCAACCAGATTAA CCATAACGGTCAGGACTACGGGCAGCCCGGAGTTCCGAATCAGTGGAATAACCATGCTCAGGGGCATCAGCAACCAGAGCCTGCAGTTCAAGTTCATCCA TTAGCTGATTTGGTGCATTTGTGCCAGGAAGGCAATGTGAAGGAAGCGATTGAGTTGATGGATAAAGGAGTTAAGGCTGATTATAACTGTTTCAATGCTC TGTTTGGGTTATGTAGCAAGCTCGAGGATGCGAAGAAAGTGCACGATTACCTTCTGCAGTCAACTAGCAGGGGTGATCTTAATCTGAACAATAAAGTGCT TGAAATGTACGGGAGGTGCGAGAGTATGATCGATGCTCGTAGGGTTTTTGATCATATGCCCAATAGGAATATGGATTCATGGCACTTGATGATTAATGGC TACGCGAATAACAACCTTGGGGATGAAGGTTTGCAAATGTTTGAGCAGATGAGGAAATTGGATCTGAAGCCTACCGAGGAGACTTTCCTCGCTGTTCTAT CCGCCTGTGGAAGTGCAGATGCAGTGGATGAGGCGTTTATATTTTTCGAAACTATGAAGAGCGAGTTTGGAATCAATCCAAAGAGGGAACACTATATTGG TATGATCGACGTGCTTGGGAAAACTGCTTTTCTCAATGAAATCGAACAGTATATCGAGAAGCTGCCATTCGATGCCACAGTGGATATTTGGGAGAAGTAT AAGAACTATGCAAGGATTCACGGAGATGTCGATCTTGAAGACCGTCTCGAAGAGTTGATTGTTGATATGGATCCCTCTAAGGCTAATCCTAAAAGGGTTC CTACGCCGCCTCAGTTGAAGCTCACTGCAATCAGCATGCTGGAAGGGAAGATCAGAATAAAGGAGTATCGTTATCCCGCTCTTTACAAGGACGATCCGAA GCTCAAGGAACTGATTGAGATGAAGAATTCGCGGTATGTACCGGATACCAGATATGTCCTCCACGACATTGATCAAGAAGCCAAAGAGCAATCTTTGTTG TATCATAGCGAGAGGCTGGCGATTGCTTACGGTCTTATCAGCACTCCAGCGAGGACGCCGCTAAGGATCATCAAGAATCTCCGCATTTGCGGCGACTGTC ACAATGCCATCAAGATCATGTCCAGGATCGTCGGGAGGGAGTTGATCGTTAGGGATAACAAAAGGTTTCATCACTTCAGGGGCGGCAAGTGCTCCTGTGG AGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10019864 pacid=23163989 polypeptide=Lus10019864 locus=Lus10019864.g ID=Lus10019864.BGIv1.0 annot-version=v1.0 MAFRLALHRSRTRLSSSSSSSVFKLRFLTLSTYAAPNEFHAPPSQSEPRVFPGERRTDPNIRWDNRIPPPPPQMNSPQQQQGYHNHNHNQWPPQQNPNQM NYPRQDMNQGYPSRGYPNPAQGHINPVQGYPNPPQHHQPPPQQRGPGNWHPQNGQSYPQHNNVNQINHNGQDYGQPGVPNQWNNHAQGHQQPEPAVQVHP LADLVHLCQEGNVKEAIELMDKGVKADYNCFNALFGLCSKLEDAKKVHDYLLQSTSRGDLNLNNKVLEMYGRCESMIDARRVFDHMPNRNMDSWHLMING YANNNLGDEGLQMFEQMRKLDLKPTEETFLAVLSACGSADAVDEAFIFFETMKSEFGINPKREHYIGMIDVLGKTAFLNEIEQYIEKLPFDATVDIWEKY KNYARIHGDVDLEDRLEELIVDMDPSKANPKRVPTPPQLKLTAISMLEGKIRIKEYRYPALYKDDPKLKELIEMKNSRYVPDTRYVLHDIDQEAKEQSLL YHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFRGGKCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	0	1
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	1.4	0.8726
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	1.7	0.8991
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	3.5	0.8559
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	4.6	0.8573
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	6.7	0.8423
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	9.2	0.8336
AT2G35790			unknown protein		Lus10023498 [exp]	9.5	0.8228
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	11.8	0.8309
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	12.0	0.8169
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	12.3	0.8313

Compare expression of checked genes

Lus10019864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.