Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17930 583 / 0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G80930 67 / 3e-11 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014048 [exp] 822 / 0 AT5G17930 720 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10002210 [exp] 66 / 7e-11 AT1G80930 909 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10003392 [exp] 56 / 8e-08 AT1G80930 491 / 1e-162 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10011226 [exp] 53 / 2e-07 AT1G80930 266 / 2e-83 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061400 [exp] 660 / 0 AT5G17930 735 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Potri.016G121100 [exp] 64 / 3e-10 AT1G80930 879 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10019865 pacid=23164005 polypeptide=Lus10019865 locus=Lus10019865.g ID=Lus10019865.BGIv1.0 annot-version=v1.0 ATGGTAGGTGAGTCACGCCGAGAGAAGCGGAAAGAAGCTAGGCAGGGCGCGAAGCAGAGAAGGAATGATTCTTGGTTGGCACATCAGAAATCTAAAGCTG AAAAGTTCAAAGCAAAGTCCGCCAAGTCGAAGGGAAAAAATGTGGATAAATCAAACACCTCGGTGGCGCAGAGTAGACAGCTAGATGCTCAGTTACAGGG AGAACGTGATTCAGATAGAACGACTACTCAAGCAATTATAAAAGCACCTGCTATTCCTCAACGTACCGTTAAAGAAAAGCAAAGTTTGAAGAGAAAGCCA CTGACAGGTTTTGAAGAGTTTCTTAGTATGGATATGAAACAAGATGAAATATCAGCACAGTACGATCTTGAAGTTGAAAAACGGCTTGCTAAGAAGCTTA AGGTCAAGGATAATTTTTTGAGGGGCATGGATGATTGTCTTAATGACCTTATGCAAGGTAAGCCATCTCCATTTGATTCTGATAAAGAACATGCCCCGGA TGCCGAAGCTTACCAGTCGGAGAGCGCTGAGGATGATGACCCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATTCTGAGAGCGCTGAGGATGATGAC CCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATTCTGAGAGCGCTGAGGATGATGACCCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATTCTG AGAGCGCTGAGGATGATGACCCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATTCTGAGAGCGCTGAGGATGATGACCCTTCTAATACTGGAAGTGA GGATGAGATGTCCCATTCTGAGAGCGCTGAGGATGATGACCCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATTCTGAGAGCGCTGAGGATGATGAC CCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATTCTGAGAGCGCTGAGGATGATGACCCTTCTAATTCTTTCTTCTTCTTTTGGTTGATGTCTACCT CGTATGCTGCTGTTTTTGCAGCTTTTGTTGCAGGCATGGGTTGTTCTGCTGGAATGGACTTCAGCGCAAAACTCATGGCTGCACTTGCTAAAGATTTTGA GGACGAGTACCGTAAAGAAGACAATCTATCTTTGAGAAACCTCACTCTCTTGCTGTCCTATTTATACATATTTGGAGTTTGTTCAAGTGATTTGATATAT GACTTTTTGATGATGTTGAGCAAGCGGTTGACAGAGGTTGATGTTTCCACCATCTTGACTGTCTTACAATGCTGTGGGATGAAATTAAGAGGCGATGATC CTACTGTCATGAAGAATTTCATTCAGAGTGTTCAGAATAGGGTGAATGAGCTAAAGGCTTCCTCCAGTGAAGAGGAGGGAAAACCCAATAGCAGAAGAAT GGAGTTCATGCTTGAAACGATATGTGACATAAAAAACAATAAGAAGAGACCTACTGGAGAAACTTCGCTACACGCTCGAATTAAGAATTGGCTTAAAAAG CTTGGGGTCGAAGACATTTTGCTTAGAGGACTTAAATGGAGCAAGCTGCTTGATCCTCACAAGAAGGGTTTGTGGTGGTCGTCTGGTGATCTGGCTACTA CAGCTGGTGATTTCGAAGAAGTTGCTAATACAATTGACAAGGAGGTGTTGGAGGCTCAAAAGATGCTGCAGCTTGCTGCTTCTCAAAGGATGAATACAGA TACAAGGAAGGCAATATTCTGTATCATAATGAGCGGAGAGGACTACATCGATGCCTTTGAGAAGCTTCTCAGACTAAATTTAAAGGGAGAGCAGGACAGG GAGATTATGCGGGTCCTTGTAGCGTGCTGTTTACAGGAGAAAGTCTTTAACAAGTACTACACTGTTCTGGCTTCCAAATTGTGTAAACATGAAAAGAACC ACAAGTACACATTACAGTATTGCATTAGGGACCACTTCAAAGAGTTGGACTCGATGCCACTTGCAAGATCGATGCACCTAGCGAAGTTTGTGGCAGAGAT GGTTGTTAACTTTTCGCTCTCCCTTTCCGTCGTGAAGACCATCGACTTTGACGATACCGCACAGCTAACCGCCAAGAGGATCAAACACTTCCAGATGCTT TTCGAGGCCATTTTCGAGTATCCTGATAAAATTGTCTGGAATACGTTCACTCGCCTGGCGATCGACCCGGAGCTGGAATCGGTCCGGCATGGGATGGAGT TCTTTATCAGGGAGTACGTTGTGAAATCTGACAAGGCCTTGGCTCGCAAGTTCAAAGTTGCAAAGAAAGCTCTTGGCAATATGGAAGGAGTCCTAATGTG A
AA sequence Show only first row Show all	>Lus10019865 pacid=23164005 polypeptide=Lus10019865 locus=Lus10019865.g ID=Lus10019865.BGIv1.0 annot-version=v1.0 MVGESRREKRKEARQGAKQRRNDSWLAHQKSKAEKFKAKSAKSKGKNVDKSNTSVAQSRQLDAQLQGERDSDRTTTQAIIKAPAIPQRTVKEKQSLKRKP LTGFEEFLSMDMKQDEISAQYDLEVEKRLAKKLKVKDNFLRGMDDCLNDLMQGKPSPFDSDKEHAPDAEAYQSESAEDDDPSNTGSEDEMSHSESAEDDD PSNTGSEDEMSHSESAEDDDPSNTGSEDEMSHSESAEDDDPSNTGSEDEMSHSESAEDDDPSNTGSEDEMSHSESAEDDDPSNTGSEDEMSHSESAEDDD PSNTGSEDEMSHSESAEDDDPSNSFFFFWLMSTSYAAVFAAFVAGMGCSAGMDFSAKLMAALAKDFEDEYRKEDNLSLRNLTLLLSYLYIFGVCSSDLIY DFLMMLSKRLTEVDVSTILTVLQCCGMKLRGDDPTVMKNFIQSVQNRVNELKASSSEEEGKPNSRRMEFMLETICDIKNNKKRPTGETSLHARIKNWLKK LGVEDILLRGLKWSKLLDPHKKGLWWSSGDLATTAGDFEEVANTIDKEVLEAQKMLQLAASQRMNTDTRKAIFCIIMSGEDYIDAFEKLLRLNLKGEQDR EIMRVLVACCLQEKVFNKYYTVLASKLCKHEKNHKYTLQYCIRDHFKELDSMPLARSMHLAKFVAEMVVNFSLSLSVVKTIDFDDTAQLTAKRIKHFQML FEAIFEYPDKIVWNTFTRLAIDPELESVRHGMEFFIREYVVKSDKALARKFKVAKKALGNMEGVLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17930			MIF4G domain-containing protei...		Lus10019865 [exp]	0	1
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10037223 [exp]	2.6	0.8928
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	5.1	0.9148
AT1G06900			Insulinase (Peptidase family M...		Lus10042213 [exp]	6.9	0.8660
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	7.1	0.9002
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	8.5	0.9002
AT3G56870			unknown protein		Lus10018851 [exp]	10.0	0.8719
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	10.4	0.9021
AT5G26760			unknown protein		Lus10022386 [exp]	10.7	0.8236
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	11.5	0.8997
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	12.0	0.8639

Compare expression of checked genes

Lus10019865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.