Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19210 1207 / 0 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT1G08600 259 / 1e-71 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT1G03750 243 / 9e-68 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT2G18760 244 / 8e-67 CHR8 chromatin remodeling 8 (.1) AT5G63950 227 / 2e-61 CHR24 chromatin remodeling 24 (.1) AT3G06010 221 / 3e-59 ATCHR12 Homeotic gene regulator (.1) AT3G06400 220 / 3e-59 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT2G13370 219 / 1e-58 CHR5 chromatin remodeling 5 (.1) AT5G18620 217 / 3e-58 CHR17 chromatin remodeling factor17 (.1.2) AT5G19310 217 / 5e-58 Homeotic gene regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014047 [exp] 1741 / 0 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10003543 [exp] 256 / 6e-71 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10033909 [exp] 250 / 1e-68 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10033669 [exp] 244 / 5e-68 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10015690 [exp] 233 / 4e-63 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 231 / 1e-62 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10009711 [exp] 224 / 5e-60 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10034064 [exp] 223 / 6e-60 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10022423 [exp] 223 / 2e-59 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G141500 [exp] 1292 / 0 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.013G048500 [exp] 268 / 2e-74 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 256 / 1e-70 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.005G226500 [exp] 243 / 8e-67 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.008G149900 [exp] 243 / 1e-66 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.017G012400 [exp] 238 / 1e-65 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.010G091200 [exp] 237 / 9e-65 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.005G066600 [exp] 228 / 1e-61 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 225 / 7e-61 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.001G253400 [exp] 224 / 5e-60 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019866 pacid=23163953 polypeptide=Lus10019866 locus=Lus10019866.g ID=Lus10019866.BGIv1.0 annot-version=v1.0 ATGAGAGCTCCAGCCCGGACTCCGACGAAAGAAGACAACGGGGAAGAAGAGGAAGAAGCAGGAACAGAAACCGACATCGACTCCGATGAGGAGGAATCGT TGTCCGATCCAACTGATTCCGGCGAGGAGTACACTGGCGACGGCGAAGAAGAGCGAGCGGAAGACGAATTCGAACAACAGAGACCCGGGGAGAAAGGTGC GGTGACCGATGGAGCTAGGAAATCGGAGAACGTTGATGCTCTCGTCAGGGGAAACCTAGTTGTGAGAAGGCAATCGCTGCTTCCTCGAGTTATTTCAGTG ACGGATGGGGCAGCCGTTTGCAGGAAGCCCTTTAAACCCCCTTGTTCTAGTGGATATGCTGATAGTAGCGAAAAACTGATTCGCCGTCTTGGTGCTCGTA AACGCTTCGTCCCGTGGGGTTCTTCTACGCCCATTGTGATTCCAAGCTCTAACAGAATTAGCTTGCCCGATGATGTTGAGAAAGAAGCAGAGGAGGAAAC CGTGGCTTTGCCACCAGGGGTTGAACCTTTAGTTCTGTGGCAACCTTCAGAGCCTGGGGATGGAGCTATAATGGTGGATCAATTGCTCGTTCAGTTCCTT CGGCCCCATCAAAGAGAAGGGGTTCAGTTCATGTTTGAGTGTGTTTCTGGGCTTAATGGTGCTGCCAATATTAATGGATGCATTCTAGCTGATGATATGG GCTTGGGGAAAACATTACAATCAATCACTTTGTTGTACACTCTACTATGTCAAGGATTTGATGGGAAGCCAATGGTTAAAAAGGCTATAATCTGCACTCC GACCAGTCTTGTGAGCAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAGAGGGTTAAGCTCATAGTTTTATGTGAAAGCAGCAGAGAAGATGTTGTC TCCGGGATAAATAGTTTTGCAAGTCCTTTCAACTCTACTCAGGTCCTGATTGTTTCTTATGAGACTTTCCGGCTGCATTCGACAAAATTCAACCGTGAAG GATCCTGTGACCTTCTCATATGTGATGAGGCCCACAGGTTAAAGAATGATCAGACATTAACTAATCGGGCATTGGCAGCTCTCTCATGCAAACGACGGAT TCTATTGTCAGGGACGCCTATGCAGAATGACCTAGAAGAGTTCTTTGCAATGGTTAATTTCACCAATCCAGGGATTTTGGGAGATGCAGCATACTTTCGT CGTTATTACGAGGCACCTATAATCTCTGGAAGAGAGCCAACAGCTACCAATGATGAGATGATCCTTGGTGTTGAGCGCTCTGCGGAACTAAGTGCTAAAG TAAATCAGTTCATACTGAGGAGGACCAATGCCCTGTTGTCAAATCACCTGCCACCAAAGATAGTTCAAGTTGTTTGTTGCAAATTGACCCCTCTCCAAGC AGAAATATACAACCATTTCATACATTCCAAAAACGTAAGGTTTCAAGCTTATCATGTGGTTAAACGTGCAATTAATGAAGAAGCAAAAAAATCTAAGATT CTGGCTTACATTACTGCTCTGAAGAAGCTCTGCAATCATCCAAAGCTCATCTATGATACTATAAAGAGCGGAAAACCGGGAACTTCAGGATTTGAGGATT GCCTTCGCTTTTTCCCTCCATCGATGTTTTCTGCAAGATCTGGATCTTGGAGTGGCGGTGATGGTTCTTGGGTTGAACTGTCTGGTAAAATGCATGTCTT GGCTCGGTTACTGGCTCATTTACGTCGGAGAACAGATGACCGAATTGTTTTAGTGTCGAACTACACTCAGACGTTGGACCTTTTCGCTCAACTGTGTCGT GAAAGAAGGTACCCACACATACGGCTTGATGGAGCAACTTCAATCGGAAAAAGGCAAAAGTTGGTTAATCTCTTCAATGATCAATCAAAGGATGAGTTTG TATTTCTCTTAAGCAGCAAGGCAGGTGGATGTGGACTCAATCTGATTGGTGGAAATCGGCTTGTCTTATTTGACCCAGACTGGAATCCTGCCAATGACAA ACAGGCTGCTGCTAGAGTTTGGCGGGATGGACAAAAGAAGAGAGTATATATCTATAGATTTCTCAGTACAGGAACCATCGAAGAAAAGGTTTATCAGCGT CAAATGTCAAAGGAAGGCCTGCAAAAGGTTATCCAGAATGAGCGCAATGATCGCAATGAGAAACAGGTTAACCTCCTCTCTGCAGACGATTTACGTGATC TTTTCACATTCCATGAGAATGTCAGGTCAGAAATTCACGAAAATATGAACTGTGTCCGCTGCCTAGTAGACGACAATGACGAACCAAAGAGCATGGGAAA TGAAGATGCATCGGAAAATAATAAGCAGTCCAGTGAAGATGGGTCTGATATCGGTGGATTTGCAGGAATATCAGGATGCCTAGATAAATTGAAAAGTTCA GAGAAACAGGTAGGGACTCCATTGGAAGAGGATCTAAGCAGCTGGGGGCATCACCTTCAACCAGCGTCTGTGCCTGACTCTATACTTCAGGCTTCTGCTG GAGATGAGGTTACATTTGTTTTCACAAACCAAGTGGACGGGAAGCTCGTACCGATCGAATCAAACCCATCGACAAAGATCCGGTTCGATGATAAGGAAAA TCGGAACGGGGGCCAGGTTACAAAGTCAATCCTATTTGCAAAGCCAAGGCAATCCATTTCTCCTTGTGCTAATTCTTCCCCCACATTATTCCAACAACCT CCTGTGCAAAGAGCAACGCTGAAACGATCAAGAACGCCGTTGAAGGGTATCGGAAATGCTGAACTCAAATCCGAACTTGCTTTCTCTGTGAAAAGACCAT CTCCTTGCGTTATAGCGTTAGACGATGACGACGATGAATTTGCTTGA
AA sequence Show only first row Show all	>Lus10019866 pacid=23163953 polypeptide=Lus10019866 locus=Lus10019866.g ID=Lus10019866.BGIv1.0 annot-version=v1.0 MRAPARTPTKEDNGEEEEEAGTETDIDSDEEESLSDPTDSGEEYTGDGEEERAEDEFEQQRPGEKGAVTDGARKSENVDALVRGNLVVRRQSLLPRVISV TDGAAVCRKPFKPPCSSGYADSSEKLIRRLGARKRFVPWGSSTPIVIPSSNRISLPDDVEKEAEEETVALPPGVEPLVLWQPSEPGDGAIMVDQLLVQFL RPHQREGVQFMFECVSGLNGAANINGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVKKAIICTPTSLVSNWEAEIKKWVGERVKLIVLCESSREDVV SGINSFASPFNSTQVLIVSYETFRLHSTKFNREGSCDLLICDEAHRLKNDQTLTNRALAALSCKRRILLSGTPMQNDLEEFFAMVNFTNPGILGDAAYFR RYYEAPIISGREPTATNDEMILGVERSAELSAKVNQFILRRTNALLSNHLPPKIVQVVCCKLTPLQAEIYNHFIHSKNVRFQAYHVVKRAINEEAKKSKI LAYITALKKLCNHPKLIYDTIKSGKPGTSGFEDCLRFFPPSMFSARSGSWSGGDGSWVELSGKMHVLARLLAHLRRRTDDRIVLVSNYTQTLDLFAQLCR ERRYPHIRLDGATSIGKRQKLVNLFNDQSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQR QMSKEGLQKVIQNERNDRNEKQVNLLSADDLRDLFTFHENVRSEIHENMNCVRCLVDDNDEPKSMGNEDASENNKQSSEDGSDIGGFAGISGCLDKLKSS EKQVGTPLEEDLSSWGHHLQPASVPDSILQASAGDEVTFVFTNQVDGKLVPIESNPSTKIRFDDKENRNGGQVTKSILFAKPRQSISPCANSSPTLFQQP PVQRATLKRSRTPLKGIGNAELKSELAFSVKRPSPCVIALDDDDDEFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	0	1
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	1.7	0.9655
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	2.8	0.9661
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	3.2	0.9676
AT4G21820			binding;calmodulin binding (.1...		Lus10007665 [exp]	3.7	0.9590
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	6.0	0.9650
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	6.7	0.9602
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	6.9	0.9591
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10030406 [exp]	8.4	0.9234
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	10.4	0.9573
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	11.0	0.9519

Compare expression of checked genes

Lus10019866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.