Plant FIBer expression Database

Lus10019867 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19200 83 / 4e-21 unknown protein
AT4G34419 81 / 2e-20 unknown protein
AT3G50640 63 / 4e-13 unknown protein
AT5G66800 54 / 1e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014046
[exp]
222 / 1e-75 AT3G19200 89 / 8e-23 unknown protein
Lus10009349
[exp]
72 / 2e-16 AT5G66800 113 / 5e-32 unknown protein
Lus10019352
[exp]
64 / 1e-13 AT5G66800 85 / 3e-21 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G141600
[exp]
129 / 6e-39 AT4G34419 95 / 2e-25 unknown protein
Potri.009G102800
[exp]
127 / 4e-38 AT4G34419 95 / 2e-25 unknown protein
Potri.007G042600
[exp]
97 / 3e-26 AT5G66800 121 / 4e-35 unknown protein
Potri.008G150300
[exp]
40 / 0.0002 AT3G05980 154 / 3e-46 unknown protein
PFAM info
Representative CDS sequence
>Lus10019867 pacid=23164094 polypeptide=Lus10019867 locus=Lus10019867.g ID=Lus10019867.BGIv1.0 annot-version=v1.0
ATGGATGCAAGAATCTCCTTCTCCAATGACTTTGTAGACACACAGCAGCACCACCACCACCATGGCAAGACCAAGTACAGGGAAGCTCCGGTGTCGTCGG
ATTTCGAATTCTCGGTGAAAGACTTCACATTGATCCCCGCCGATGAGATCTTCTTCAAGGGGGTGATGGTGCCATTGAAGGAGGATGAAGGGAGGAAGAT
GACACTCAGGGAAGAGTTGATGATGGTCGATGATTTGCCAACAAAGGTGCATCCTCCTAAGATTTCTGGGTGGTGGAAAGAGAAGTTGGGTTTGAAAAGA
GGTACCAACAACAACAACAACAATCATGGGATGGTCTTGGAGAGAATTGAAGAGAAGAGGGCTTCTTCTTTTGTTCATGGCGACAGGCTAAGTTTAGGAA
GTGCTAACTGA
AA sequence
>Lus10019867 pacid=23164094 polypeptide=Lus10019867 locus=Lus10019867.g ID=Lus10019867.BGIv1.0 annot-version=v1.0
MDARISFSNDFVDTQQHHHHHGKTKYREAPVSSDFEFSVKDFTLIPADEIFFKGVMVPLKEDEGRKMTLREELMMVDDLPTKVHPPKISGWWKEKLGLKR
GTNNNNNNHGMVLERIEEKRASSFVHGDRLSLGSAN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19200 unknown protein Lus10019867
[exp]
0 1
AT2G12646 PLATZ transcription factor fam... Lus10008814
[exp]
2.0 0.9512
AT2G47270 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA... Lus10001447
[exp]
7.3 0.9227
AT3G08030 Protein of unknown function, D... Lus10016393
[exp]
8.1 0.9472
AT5G10130 Pollen Ole e 1 allergen and ex... Lus10026040
[exp]
8.4 0.9430
AT1G01470 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE... Lus10010139
[exp]
8.5 0.9272
AT2G45430 AT-hook AHL22 AT-hook motif nuclear-localize... Lus10006664
[exp]
8.7 0.9443
AT2G17080 Arabidopsis protein of unknown... Lus10014450
[exp]
9.2 0.9435
AT3G09280 unknown protein Lus10021099
[exp]
10.4 0.8890
AT3G24750 unknown protein Lus10038162
[exp]
10.7 0.9449
AT5G14920 Gibberellin-regulated family p... Lus10032168
[exp]
11.6 0.9403

Lus10019867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.