Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19190 1195 / 0 ATATG2 autophagy 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014045 [exp] 3309 / 0 AT3G19190 1324 / 0.0 autophagy 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102900 [exp] 1471 / 0 AT3G19190 1477 / 0.0 autophagy 2 (.1) Potri.004G141700 [exp] 1417 / 0 AT3G19190 1412 / 0.0 autophagy 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09333 [flax] [poplar] ATG_C Autophagy-related protein C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10019868 pacid=23164018 polypeptide=Lus10019868 locus=Lus10019868.g ID=Lus10019868.BGIv1.0 annot-version=v1.0 ATGTTCCCGTGGAACATCGCCAAGTCGGCGGAGGCCGTCTTATCGCAGTGGGCGCTAAAGAGGCTGTGTAAGTTTGTGCTGAAGAAGAAGCTAGGGCAAT TCATTTTGGGGGAAATTGATCTTCAGCAGCTTGATGTTCAGCTCGGTCAAGGTGTGATCCAGCTCAGCGACCTTGCTCTTGATGTTGATTATCTTAATGA CAAGTTTGGTGCAGAAGCATCTGTTGTTATAAAGGAGGGATCAATCGGCTCTCTTTCGGTTAAAATGCCTTGGAAGGGTAACGGTTTTGAGGTTGAGGTG GATGAGCTTGAGCTTGTTTTTGGACCCTGTTTAAAAAATGAAGCACCGATTGTTGGTGATAAATTTCGTGCCAGTCAAGATAAAAGAACGAGCATGCATG ATGAGATGGGAAAACTTGGCAATGTTTTGGACCCTGCAGCAAGATCGGGTTCTGTTGATATCCATGAAGGCGTGAAGACAATTGCAAAAATGGTTAAATG GTTCTTAGCAAGCTTCCATGTGCGTGTTAAGAAATTACTGGTTGCTTTTGATCGATACTTGGAAAGTGAAAAGGAAGTGGGCTGCCACAAACTCGTGGTT TTACGCATAGCTGAAGTGGAATGTGGAACATGTGTTTCTGATGATGTTGGTTCGATCACTTATGGAACCACTGATGATTTGCTCGGAATTAGTCGATTGA CAAACTTTCTTAAATTTCAAGGTGCAGTCCTTGAACTCCTAGAAATGAATGATGCCAAAAGAGAATCTGTGTTATCTGAATCATTATCAGGTTCGACTTT CGATGAGGTTCCTGCAAATGTAACAATGCCTATATTGTTGGGGAGTAAGGATGGATTTTCCGGGGAATTGAAGTTGAGTATACCCTGGAATAATGGTTCT CTAGATATTCGCCAAGTGGATGCAGATATTTGTATAGATCCCGTGGAATTGAGAGTTCAGCCTGGTACTATTAAATATTTCCTTCTTGTGTGGGAAGCTT ATAAGATCTTGAACAGGGATTCTGCTCTCAATTCACAGTCTAAGCCTGTGGACTCTGTTTACTTCAATTCAGCTTCTCAGTTGTATCCATCAACCCATAA TTCTGCTTCAACACCAGCTGCGAATTTGTTTTGTGCTCCTGGTACTTCTCCACGGGTACAACAATCCTTCAGTGATTCGGTTCTTCCTGGATCACATCTT ATACCTGACTGGATGCCGATATCTGTTAAAGATGGTGTGCAGGAGCTTGACCTTGGAGCAAGCGTGGATCAGTTCTTTGAGTGTTTTGACGGAATTAGAA ATTCACAGTCAGCTTTGGGTAGTAGTGGGATGTGGGGCTGGACATGCTCTGTATTTGGTGCATTAACTGCTGCTTCCAGCCTTGCTTCTGGTTCTTTGCT CGTTACATCTGAGCAGCAGCATATGCAGACGAATCTCAAAGTCCGTTGGACTGGAATTTCTGTTGTTTTATTGTTCCAAGATGAATACGAGCAGTGTTGC TGCAAATCAACCGGGGACCAACGTAGTCTGAAACCTCATCATGTTACTGCTGAGTGCAAAGACATTTCAGTTGTTGTGCAGGTAAGTCCACAACAAATGA TAATTGATGGTCATGTGAAATGTATTGAGGTTTCTGAAAACTCACAGAGTGGAAATGACGGTATGTTCTTCCCTCGGTCTTCTACTAATGGCCAGGATGA GACTATTCAGATTCAGCATCTGCAAGCTGCTCTACTTAGTGCTCTCCCATTGGCCAATAATCTAAATTCAGATGATTGGAGTACTCCGCATGCTTCTGAT ATTCATGCTGGAAAGACAAAAGTTAAAATGCTCAGTACCTCAGGTGTAACTCATTGCCAATTTGTTGTAAGTTCAGATTCATCTCACCGAGATGCGAAAG TACCAGCATCTTTTTCATTGCATCTCCCACACTTTGTGTTCTGGGTGAACCTTATTTCGATAAAGATGCTAATGGATCTTGTTGAAGATGTGTCAAGTGC TGTTAGTACCAGTAGCGGGAGCGATGAATTTAAAACTTCCAGTGAGAAGTGTGGCTCTACAGTTCATGAATCCAAAGGAGATGTGGAAGCATCATCTTCA ACCGAAAACTGGCAATGTAACATTTCAATTCCCAGTGCAAGGATAATACTCTGTTTTCCATTAGAGATGGACAAACTAATGCAAAACAGCTGGTGCTGGG ATCAGTTTGTTGCAATTGATTTCTCTTCGCCATCTGTCCGGGAGAAAGGGAAAATACAGGGTCACGGCCCTGTAGCTGATTCTACATCATGGAGAAGGTA TATATCAAAGCCTGCATGGTCTGTGTATGTATCCGTTGGCGATCTAAGAGTCTATTTGATCAGCTCCAGAAAAAATGACGACGCAGTTATGGCTAGGATG ACATTCTGCGTTCAGAAGGTTTTATCTGTCAGCAATAGAAGTGGGTGTCTTTCTACAGTTAGCATAGTGTCTCAGGATACTGTTATGACTGGTCCTTGGG TTGCCGAGAGAGCAAAGTTCATGGCTACTTCAGAAGAGTCCAGGATGAGAGGAAACAACAACGCTAAAGGTCATGAATTTGCAACAGTGACAGCCGTGAA AGACACAGATGATATGAGTTCTCGAACTCGCAGGGACATCTTGTTGACCTCTGCTTTTGTTTTACATGTTCATCTACCTCCTTGTATGATTGACATGGAC AGTTCTCAGTATTGTAAGCTAGTTCTTCTGATTGGGCATATGATAAAAGGGTTGTCATGTACACCCTTGGAATCAGTTAGTCTAGATGAAGAACCATCTG TTTCGCAGATATCAGTCCTAGTGGAGTGTGATTCGCTAGAAGTTTCAATTAGACCAGACACAATGGAGGAAAGACACAGTTCCTTGCAAAGTGAACTTCC TGGATCATGGCTATGTTTCAAACTCAAAATTCGGAAACTTGAATTGATGTCTGTCTCGAGAATTGGAGGCATCGAAGATGCTACTTTCTTGTGGATAACC CACAGAGAAGGTAAACTATGGGGATCAGTCACAAGCAACCCAAGCAAAATGTTTCTTCTCATATCATGCAGCAACTCTTCCAGGAAACGTGGGGATGGAG GCGGTTCAAATGCATTGTCTTCTCGGTGGGCTGGTTCTGATATTGTCCACCTATGTGTTCCAGAGGCTATTCGTTCAATTACATCTATTACAATCAGATG TGCGACAGTTGTGGCTGTTGGTGGTCGGTTGGACTGGTTTGATGCAATATTTTCTTTCTTCAATTTGTCCTCTCCTGAAGTTGTAAACACAGATCACACT AATCTGCAGGAAGAAGGTCTCCAACCTACACACCAGACCTCTTTTCTTCTGAAGTTGGTTGATATTGGCTTAAGTTATGAACCACACTTGCAGAGTTCAA TATCAACGGATCACAGTTCTTTCTCCAGTTCCACAAATACAGGAGAGAGTGATGTGGGGCCATATTTTTCCTGTCTTATAGCTGCTTCTTCCTTGACAGT ATCCACTACTGCAATGGAAGATTCTGTGGACAATGACTACAAAATAAGAGTACAAGATCTAGGATTCCTTCTTTCTAAGGCACCTCATAATCCTGGTGGT ATTTACAGTGTGGATTACCTTCGTGATATGAGATATGTTAAAGTTGCTCAAGAAGCCCTTATAGAAGCCGTTTTGAGAACTAACAGTGAGAATGGTCTTC AATGGGAGTTAGAGTGTTCAAAGCTCCATGTTTGGATGAACACTTGTCATGATACTACCTCAGGACTTACTGGATTGGCTGCTCAACTGCAGCAGCTTTT TGCTCCTGACTTGGAGGAAGCAGTTGTGCACTTGCAAGCTCGGTGGAACAATTTCTGTGAGGCACAAGAGAAGAGCAAGTTTAACGAGGAAGGTAAGGCT ATTGTTTATGATTCCACCACAGCAACCTCTGAAGTGTTTGGCCTAAGTGCTTTCACTGTGAACGAACATAAGGCTGTAGTTGGGTTGATGGATGAGATAC GCGGAGATGCATTTTCCTTGGATGCAAAGCAGAAGCAGGCCTGTCAAAATTCGGCTGGACCCGGTCTTCGTTTGCCACCTGCTGATAGCATCTTTGGACA GCCTTATGGAATAGGTTATGAAGCTCAAGATAATTTCAAGATAATTTCTTGTGAACAGTCGTCATCAGTTGGCTTGGATAGAACTGAATCATCATTTTTA GAGAATGGTTCCTTGCCGGAATTTATAGAAAGCTATTGCATATCTGACTTACGCCCTTTGTCAGAACTATCTATAGGCAGCATAGATCCCCCTGCTCGGG TAAACAGTGGATGGTACGAAGAGTCGCCTGTAAGCATTGTAGAGGACCACATTTCAGATACTGGTGGGAGTGGTTACCTGAACCAGTTTCTTGATGACAA GTTTCTGGAGGGCTTCTCTTTAACATCAGATCATTCTGAAAAGGCTACAGGGCGTGTACTTCTTAAGGACATAAATGTGAGCTGGAAAATGTATGCTGGT TTTGACTGGGATCCACACGGCATGAACACTGAGCCATCTAAATGTACTGGTGGAAGGGACACAACTACTTGTCTAGAGGTTTCATTATGTGGGATGGAAT TACGTTGTGAGTTGTTCCCACTGACGGGAGTATGTGCATCTAAGATTTCAATTTCCATTCAGGACTTCTATCTTTACGACAAGAGCTATACTGCACCTTG GAAACTGATGCTTGGATATTACCATTCGAAAGATCATCCTAGGACAACAAATGCCAAAGCGCTCAAGCTGGACTTAGAAGCTAAATTTGATGTATGCCCT ATTCTTATACGGGTCGATTACACACCTAGTCGTGTTGATTTAACAGCATTAGGAGGTGGGAAGTATGTGGAACTTGTAAACCTTGTTCCTTGGAAGGGGG TTGAACTCGAGCTTAAACACGTACATGCTTCTGGTATCTATGGCTGGGAAAGCGCATGTGAAACAATGTTCGGGGAGTGGCTGGAAGATATATCACAAAA TCAGGTACGAAAGATCTTACGAGGCCTCCCCACTATACGATCCTTTGTTGCTGTTGGTTCTGGGGCTGCAAAGCTCGTATCACTGCCAGTTCAGAGCTAT AAGAAAGATCAGCGAGTCCTCAAGGGAATGCAAAGAGGTACCGTTGCATTTCTTAGAAGTATATCACTTGAAGCTGTCGGGCTTGGAGTGCATTTGGCAG CCGGAGCACATGATATTTTACTTCAAGCCGAGTATATCCTCACCAGTGTTCCTTCCCCAGTATCATCATCGTCCTCCACACAGGGCAAAAAGAAGTCAAA TGTAAGAAATAATCAACCAAAAGATGCCCAAGAAGGAATCCAAAAGGCTTGTGCGAGCATCAGTGATGGCCTGGGGAAAACAGCTTCTGCACTTGTTCGA ACACCGCTGAAAAAATACCAATACGGGTCCAGTGCTGGATCCGCATTGGCAACTGCAGTTCGGGGCACTCCTGCTGCTGCTATTGCTCCAGTCTCTGCCT GTGCCAGTGCTGCACATTACGCTCTACTTGGACTTAGAAATAGCCTTGATCCCGAGCACAAAAAAGAGTCGATGGAGAAATATCTAGGTCCGACTCAAAC ACACAATAGCGATTGA
AA sequence Show only first row Show all	>Lus10019868 pacid=23164018 polypeptide=Lus10019868 locus=Lus10019868.g ID=Lus10019868.BGIv1.0 annot-version=v1.0 MFPWNIAKSAEAVLSQWALKRLCKFVLKKKLGQFILGEIDLQQLDVQLGQGVIQLSDLALDVDYLNDKFGAEASVVIKEGSIGSLSVKMPWKGNGFEVEV DELELVFGPCLKNEAPIVGDKFRASQDKRTSMHDEMGKLGNVLDPAARSGSVDIHEGVKTIAKMVKWFLASFHVRVKKLLVAFDRYLESEKEVGCHKLVV LRIAEVECGTCVSDDVGSITYGTTDDLLGISRLTNFLKFQGAVLELLEMNDAKRESVLSESLSGSTFDEVPANVTMPILLGSKDGFSGELKLSIPWNNGS LDIRQVDADICIDPVELRVQPGTIKYFLLVWEAYKILNRDSALNSQSKPVDSVYFNSASQLYPSTHNSASTPAANLFCAPGTSPRVQQSFSDSVLPGSHL IPDWMPISVKDGVQELDLGASVDQFFECFDGIRNSQSALGSSGMWGWTCSVFGALTAASSLASGSLLVTSEQQHMQTNLKVRWTGISVVLLFQDEYEQCC CKSTGDQRSLKPHHVTAECKDISVVVQVSPQQMIIDGHVKCIEVSENSQSGNDGMFFPRSSTNGQDETIQIQHLQAALLSALPLANNLNSDDWSTPHASD IHAGKTKVKMLSTSGVTHCQFVVSSDSSHRDAKVPASFSLHLPHFVFWVNLISIKMLMDLVEDVSSAVSTSSGSDEFKTSSEKCGSTVHESKGDVEASSS TENWQCNISIPSARIILCFPLEMDKLMQNSWCWDQFVAIDFSSPSVREKGKIQGHGPVADSTSWRRYISKPAWSVYVSVGDLRVYLISSRKNDDAVMARM TFCVQKVLSVSNRSGCLSTVSIVSQDTVMTGPWVAERAKFMATSEESRMRGNNNAKGHEFATVTAVKDTDDMSSRTRRDILLTSAFVLHVHLPPCMIDMD SSQYCKLVLLIGHMIKGLSCTPLESVSLDEEPSVSQISVLVECDSLEVSIRPDTMEERHSSLQSELPGSWLCFKLKIRKLELMSVSRIGGIEDATFLWIT HREGKLWGSVTSNPSKMFLLISCSNSSRKRGDGGGSNALSSRWAGSDIVHLCVPEAIRSITSITIRCATVVAVGGRLDWFDAIFSFFNLSSPEVVNTDHT NLQEEGLQPTHQTSFLLKLVDIGLSYEPHLQSSISTDHSSFSSSTNTGESDVGPYFSCLIAASSLTVSTTAMEDSVDNDYKIRVQDLGFLLSKAPHNPGG IYSVDYLRDMRYVKVAQEALIEAVLRTNSENGLQWELECSKLHVWMNTCHDTTSGLTGLAAQLQQLFAPDLEEAVVHLQARWNNFCEAQEKSKFNEEGKA IVYDSTTATSEVFGLSAFTVNEHKAVVGLMDEIRGDAFSLDAKQKQACQNSAGPGLRLPPADSIFGQPYGIGYEAQDNFKIISCEQSSSVGLDRTESSFL ENGSLPEFIESYCISDLRPLSELSIGSIDPPARVNSGWYEESPVSIVEDHISDTGGSGYLNQFLDDKFLEGFSLTSDHSEKATGRVLLKDINVSWKMYAG FDWDPHGMNTEPSKCTGGRDTTTCLEVSLCGMELRCELFPLTGVCASKISISIQDFYLYDKSYTAPWKLMLGYYHSKDHPRTTNAKALKLDLEAKFDVCP ILIRVDYTPSRVDLTALGGGKYVELVNLVPWKGVELELKHVHASGIYGWESACETMFGEWLEDISQNQVRKILRGLPTIRSFVAVGSGAAKLVSLPVQSY KKDQRVLKGMQRGTVAFLRSISLEAVGLGVHLAAGAHDILLQAEYILTSVPSPVSSSSSTQGKKKSNVRNNQPKDAQEGIQKACASISDGLGKTASALVR TPLKKYQYGSSAGSALATAVRGTPAAAIAPVSACASAAHYALLGLRNSLDPEHKKESMEKYLGPTQTHNSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	0	1
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	1.4	0.9468
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	1.4	0.9467
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	2.4	0.9435
					Lus10001309 [exp]	2.8	0.9164
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	3.2	0.9339
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	3.3	0.9129
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	3.5	0.9265
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	3.5	0.9395
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	3.7	0.9224
AT3G45830			unknown protein		Lus10018121 [exp]	4.9	0.9099

Compare expression of checked genes

Lus10019868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.