Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25845 47 / 1e-06 unknown protein AT4G25850 47 / 5e-06 ORP4B OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) AT5G57400 43 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006969 [exp] 86 / 3e-19 AT4G25850 57 / 7e-10 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Lus10025251 [exp] 41 / 0.0003 AT1G06930 47 / 8e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G167300 [exp] 73 / 2e-15 AT4G25845 78 / 2e-18 unknown protein Potri.018G091900 [exp] 70 / 2e-14 AT4G25845 54 / 2e-09 unknown protein Potri.006G107200 [exp] 45 / 8e-06 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.016G133200 [exp] 40 / 0.0004 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10019869 pacid=23163978 polypeptide=Lus10019869 locus=Lus10019869.g ID=Lus10019869.BGIv1.0 annot-version=v1.0 ATGACATCATCGTCGGTGCTCCAAGGAGACGGCGCATTCTACAACCACGTAATCTCCCGTGACTCGTCTCCGTCGACTCGGGTATTATTCTACAGCCGTT CAAACGCCGCTGACGGGGTTCCTTTCAATTGGGAAACTCAGCCGGGGACTCCAAAGTTTATCCCCAAGGAGAAGGAGGAGGAGGAGGAATCATCTTCAGT TTCTGATCCGATAAATATAAATCCCCCGCCGGCCGTACTTAGCCTCTCCATTCCTAAACCGTCGTTTCTAATTACCCACCACGCTGCAAATGAATCATCC AATGTTAATAAGCTCAGCCTTTTGTGGAAATTCCTCGTCGGTAAAAAGAGGCGCCATCGCTATGATTTTCATCATCACCGCCATCCTCAACCGCAGATAA GAAGATTAAACAACGTTAACAATACAACAACTGAGAGTGGAAGCAGTTGGGACAATGGAGGAGATTCCTCTCCCAACGGTCACAATTATTCAAGCTTTTC CTCATCTACATTGTCACATTCTTCATCCAATGGCGGCGATGATGATGACGATGATGATGAAGAACATTCCAAGTTGTCGACCTCAAACTCTGACAGCTCT GGGATTGCAGGCATAAATTCTTCTAGGAGTAGTAGGATAGCCAATGATCATTATCATCGTGGTTGTGGGGGCAGGCCCTGGAACTTCAATTCCCTCCTCG TTTGCGTTTCCGGCAAGATTTAA
AA sequence Show only first row Show all	>Lus10019869 pacid=23163978 polypeptide=Lus10019869 locus=Lus10019869.g ID=Lus10019869.BGIv1.0 annot-version=v1.0 MTSSSVLQGDGAFYNHVISRDSSPSTRVLFYSRSNAADGVPFNWETQPGTPKFIPKEKEEEEESSSVSDPININPPPAVLSLSIPKPSFLITHHAANESS NVNKLSLLWKFLVGKKRRHRYDFHHHRHPQPQIRRLNNVNNTTTESGSSWDNGGDSSPNGHNYSSFSSSTLSHSSSNGGDDDDDDDEEHSKLSTSNSDSS GIAGINSSRSSRIANDHYHRGCGGRPWNFNSLLVCVSGKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10019869 [exp]	0	1
					Lus10021893 [exp]	13.3	0.5679
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021391 [exp]	16.9	0.6171
AT5G23750			Remorin family protein (.1.2)		Lus10008014 [exp]	19.4	0.5862
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Lus10007008 [exp]	26.5	0.5331
AT4G02250			Plant invertase/pectin methyle...		Lus10001464 [exp]	30.8	0.5399
AT3G49070			Protein of unknown function (D...		Lus10018879 [exp]	33.8	0.5236
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10027947 [exp]	38.2	0.5064
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10040619 [exp]	49.5	0.4684
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	62.0	0.4780
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018890 [exp]	64.2	0.4379

Compare expression of checked genes

Lus10019869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.