Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 211 / 2e-66 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 160 / 1e-47 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 107 / 9e-27 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G23530 57 / 1e-08 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G49480 44 / 0.0001 B3 REM19, RTV1 related to vernalization1 1 (.1) AT5G18000 44 / 0.0001 B3 VDD VERDANDI (.1) AT3G18990 43 / 0.0003 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G33280 42 / 0.0006 B3 REM16 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014044 [exp] 427 / 6e-151 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1) Lus10006483 [exp] 192 / 2e-59 AT5G42700 242 / 4e-81 AP2/B3-like transcriptional factor family protein (.1) Lus10009764 [exp] 189 / 3e-58 AT5G42700 229 / 3e-76 AP2/B3-like transcriptional factor family protein (.1) Lus10017434 [exp] 151 / 7e-42 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 137 / 2e-35 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10007522 [exp] 126 / 2e-32 AT5G58280 206 / 9e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 121 / 1e-30 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 115 / 2e-28 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 113 / 1e-27 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103100 [exp] 245 / 1e-79 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 216 / 1e-68 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 188 / 5e-58 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 186 / 3e-57 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 134 / 1e-37 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 135 / 7e-36 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 126 / 2e-32 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 119 / 9e-30 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 119 / 1e-29 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 105 / 5e-25 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10019870 pacid=23163955 polypeptide=Lus10019870 locus=Lus10019870.g ID=Lus10019870.BGIv1.0 annot-version=v1.0 ATGGTGGAATCGAAGAAGAAGCTAATGAGCTACGAAGAAACCCGGCTACAAAGGCTGGAAGAGAACAGGAAGAGGATGGAAGATCTCAACTTGCTCAAGC TTGCGGACCATCTTCGCCCCAAATCTAAGTCCTCCCCTGTGAAGCAGGCGAAACCGCGGGCTCCTAAACCGGTGCTGGGTCCGGCGAGAAGGTCATCTCG GATAGCTGACAAGCCCAGTGTTAGCTACAAGGAAGGTATGGTGGAGCCGTTAGAAGGACTCAGAGCCAGAAGGACTGCTCGCTACACCAGAAGCGATCGA GTGTACGCATCTTCTGCAGCAAGGAGTTATGCAGTCGAGAGAGCTGAAGAACTTGAATCAATATTGGAGAAGGAGTACCCATGTTTTGTGAAACCTATGT TGCAGTCCCATGTCACGGGAGGGTTTTGGCTGGGGCTTCCACGCGGGTTCTGCAATACTCACCTTCCTAAGCACGATGAGTTGATAACCCTGATAGACGA GGATGAACAGCAATCTGAAACAAAGTACCTTGCTGATAAAAATGGTCTGAGTGGCGGATGGAGAGGGTTCGCCATTGATCATGAACTGGTTGATGGAGAT GCACTAGTTTTCCAACTGATCAGCCCCGCAGAATTCAAGGTGCATATCATCAGGGTAAATAACGTAGAAGGCGGCGATGATTCAGAGAAGGACACCCAAG AAGAGGAAGAAGAAGATGATGATGCTGATAAGGAAAACCAGGAAGGGGAGGAAGTTGATTCTGAGAAAGAAAACCAGAAAGAGGAACAAGATGATTCAGA TGATGGCACTAAGAGGAGGTCCAAACGACTCAGGGCAGGTAATTGCTTGTCTGGTTGTTCACTTGTTCTTGAGAATTCACATTGCTTTAATAAAACTGTT AAATGTCTCGGGTCCTTGGCCCTTCTCTGGTTAAGCAAGCTCATTTCACTCCAACTCAAGGAAGTAGGGTTCCCATTTGGAGCTGAGATGGGAAAGTTTT TTGCTGTTGTAGCAATGGATGCTTTAGGCTTTCGACTATGCAGTGAGAAGGCTTTGCTACCATGTTTTGTCGGGATATCTCAGATATCTAGATAG
AA sequence Show only first row Show all	>Lus10019870 pacid=23163955 polypeptide=Lus10019870 locus=Lus10019870.g ID=Lus10019870.BGIv1.0 annot-version=v1.0 MVESKKKLMSYEETRLQRLEENRKRMEDLNLLKLADHLRPKSKSSPVKQAKPRAPKPVLGPARRSSRIADKPSVSYKEGMVEPLEGLRARRTARYTRSDR VYASSAARSYAVERAEELESILEKEYPCFVKPMLQSHVTGGFWLGLPRGFCNTHLPKHDELITLIDEDEQQSETKYLADKNGLSGGWRGFAIDHELVDGD ALVFQLISPAEFKVHIIRVNNVEGGDDSEKDTQEEEEEDDDADKENQEGEEVDSEKENQKEEQDDSDDGTKRRSKRLRAGNCLSGCSLVLENSHCFNKTV KCLGSLALLWLSKLISLQLKEVGFPFGAEMGKFFAVVAMDALGFRLCSEKALLPCFVGISQISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019870 [exp]	0	1
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10040853 [exp]	4.4	0.9488
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	7.7	0.9436
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	8.7	0.9369
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	8.9	0.9234
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	10.4	0.9251
AT1G79060			unknown protein		Lus10031795 [exp]	10.6	0.9295
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	11.0	0.9146
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10035183 [exp]	11.4	0.9015
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	12.0	0.9316
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005892 [exp]	12.4	0.9407

Compare expression of checked genes

Lus10019870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.