Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 115 / 6e-29 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 107 / 9e-27 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 89 / 1e-19 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 47 / 7e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 48 / 8e-06 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G25560 47 / 2e-05 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT4G33280 45 / 9e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G68840 42 / 0.0006 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014043 [exp] 580 / 0 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 440 / 5e-152 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 290 / 6e-92 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 263 / 2e-82 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 226 / 8e-66 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 219 / 9e-66 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 217 / 2e-65 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 186 / 5e-54 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10014586 [exp] 124 / 2e-32 AT3G19184 77 / 2e-16 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140700 [exp] 267 / 6e-85 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 264 / 2e-83 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 223 / 3e-67 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 219 / 6e-66 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 206 / 7e-61 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 202 / 2e-59 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 137 / 5e-37 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 127 / 1e-33 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 114 / 1e-29 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 111 / 3e-28 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10019871 pacid=23163992 polypeptide=Lus10019871 locus=Lus10019871.g ID=Lus10019871.BGIv1.0 annot-version=v1.0 ATGCAATCGTCCATTTGGGTTCCAGTTCTTCTTTCATCCACCGCCATGACAATCCCTCAAGCTCATCACATTCAAAAGAGGAAGAGAGGCCGCCCCAGGA AGCTGAAGAAGCAGAATCCAAAACATCAGCCCAGAACTACATGGCTCCAAGTCCCAAAAGTAACTGTTGGAGATGGAGAGGAAGGAGGAAGCAATGTTGC TGCAGCCAGGTCTAAGCAATGCTACAAGCGAAGAAGATTCTCCACGGGTGATCTGTATGACAATGTGGAAGCTATGAATGTTGTGATGAACAAGGCTGAA GAGATTAAAGCTACTCTACCAAACGATCATCCTGTATTGGTTAAGATGATGCTTCCTTCCCATGTTCAAGGCGGATTCTCGTTGAGTATGGCGAAGGATT TCTGCAACGACCATATGCCGATGATGGACCGGATGGTTGAGTTGGAAGATGAAAATGGACAAGTTTGGTCTGCAAAGTACTTGGCAGGGAAGCAAGGGCT CAGTGGTGGGTGGAGAGGGTTCTCTAATCATCACAAATTGGCTGAAGGAGATGTTCTGGTTTTTGAATTGGTTAAATCAATCAAGTTCAAGGTTTACATA GTGAGGAATAATGCCTTTGAAAAGCTTGATGATGTTGAGTTACGAAATCCGGATTCTGATGCCCTTGAACCACCCGAGGATGCCGATAAGCAATGTAGCC CCGAGATTGAAGGTCGAGACTTCGAGTTATTACAACCATTAGGACCGGAAGTTGGGAAAGATGGTGGCAATGTAGAAAGTAAAAGTTCGGAGAAGGTGAC ATCAGGCGAAATCAAGGTGCCAAAACCGGCTCCTGATTTCGGACAGGTGAAAAGTTTTGTAGATTTCAACATTGTCACATCAAATGGTTCGACGATCAAC AGTGAACTACCCGACCACGTTGAGTTCGGGTACTATGCACTTTGCAGCAGTCAGAATTCATATCTGCATCAAAGTATTCTGAAGGACGTCAACAGTAAGC TGATTTCCGGAATGATTGTCGAAACGGTGGACATTGCCAATGCCATGATGAATTCGGAGGTTGGCACCGTTCAAGGTGAAGATTTCGCGACTTGGGGGAG TAAATTGGACGCTTTTGAGAAGTTGGGTATGGAAGTCGGGTTTTTACAGGTTCGGTTGAGGGAGCTCGTGCGTATATTCGACAAGGCGGACGAGTACAAG AAGCTAAGTGCAGAAAGAGGTCATGTTGTAGAGAAGGTGGCAGACTTGGAGGCACAACTTGGAGAAGCCAGAGGGGGACTGGAGAAATTAGATTGGGAGA TTGGGAGATTAGGGTTTGATGGGAAAGGTGTTGAACTTGCTTTTGTAGAGTTGGCTAATGCTCCTTGGTCATGA
AA sequence Show only first row Show all	>Lus10019871 pacid=23163992 polypeptide=Lus10019871 locus=Lus10019871.g ID=Lus10019871.BGIv1.0 annot-version=v1.0 MQSSIWVPVLLSSTAMTIPQAHHIQKRKRGRPRKLKKQNPKHQPRTTWLQVPKVTVGDGEEGGSNVAAARSKQCYKRRRFSTGDLYDNVEAMNVVMNKAE EIKATLPNDHPVLVKMMLPSHVQGGFSLSMAKDFCNDHMPMMDRMVELEDENGQVWSAKYLAGKQGLSGGWRGFSNHHKLAEGDVLVFELVKSIKFKVYI VRNNAFEKLDDVELRNPDSDALEPPEDADKQCSPEIEGRDFELLQPLGPEVGKDGGNVESKSSEKVTSGEIKVPKPAPDFGQVKSFVDFNIVTSNGSTIN SELPDHVEFGYYALCSSQNSYLHQSILKDVNSKLISGMIVETVDIANAMMNSEVGTVQGEDFATWGSKLDAFEKLGMEVGFLQVRLRELVRIFDKADEYK KLSAERGHVVEKVADLEAQLGEARGGLEKLDWEIGRLGFDGKGVELAFVELANAPWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019871 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	1.0	0.9411
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10017233 [exp]	2.0	0.9069
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Lus10008353 [exp]	2.6	0.8944
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	6.0	0.8733
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	6.9	0.9084
					Lus10011220 [exp]	7.1	0.9149
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	10.4	0.8964
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	11.6	0.8845
					Lus10018463 [exp]	11.7	0.8895
AT1G23000			Heavy metal transport/detoxifi...		Lus10032445 [exp]	13.2	0.9032

Compare expression of checked genes

Lus10019871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.