Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 118 / 3e-30 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 116 / 3e-30 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 100 / 9e-24 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 56 / 2e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 52 / 4e-07 B3 VDD VERDANDI (.1) AT1G49480 45 / 3e-05 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 45 / 8e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G31640 43 / 0.0004 B3 REM5 transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019871 [exp] 440 / 5e-152 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 368 / 9e-125 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 269 / 6e-84 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 248 / 5e-77 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 243 / 3e-75 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 213 / 8e-64 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 205 / 4e-61 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 207 / 3e-59 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10007522 [exp] 135 / 4e-35 AT5G58280 206 / 9e-64 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103300 [exp] 274 / 2e-87 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 267 / 7e-85 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 249 / 2e-77 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 249 / 3e-77 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 205 / 9e-61 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 204 / 3e-60 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 135 / 1e-36 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 132 / 1e-35 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 115 / 8e-30 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 111 / 3e-28 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10019872 pacid=23163986 polypeptide=Lus10019872 locus=Lus10019872.g ID=Lus10019872.BGIv1.0 annot-version=v1.0 ATGAGTATTGACCAAGATCAATGCATTTCCCAGGGGGTCTTACCTGGAAGGCCTAGCCTTGTAGCCTCACCAGATGGCAGACACAGAAAACTACTGCCTG TCCTGCTACAAAGAAGAGGGGAAGACCAGCACGCAACTCTTGGGAATGAACACCAAGAAGCAGCAGCTGGAGGAAGCAAAAATGTTGTTCCTCCAACCAG GAAGCGGAGAAGAGCCTCCATGGGAGATCTGTATGTTAATGTTGAGGCTATGAATAATGTGAAGAACAAGGCAGAGGAGATCAGAGCTAAGCTTGTTCCT GATGGTCACCCTACGTTCGTAAAGACTATGCTTCGTTCACATGTTACTCTCGGATTTTGGCTGGGTTTTTCAAGGGAGTTCTGCGACGATCATTTGCCGA TGGTGGATAAGGACGTTGAGTTGGAAGATGAAAGTGGACAATTTTGGAATGCAAAGTATCTGGCAGTGAAGCAAGGACTCAGTGGCGGATGGAGAAAGTT CTCTGTTGATCACAAATTGGCAGAAGGAGATGTTGTCGTTTTTCACTTGCTTAGGCCAACCAAGTTCAAGGTTTACATAGTGAGGAGAAATGAATTTGAA GAACCCAATCTGAATTTGGATCCAACTCAGCCTTCTGCTAGTGAGGCCAATAACAAATGTTCCAAAAGGATCAAAGCTCAACAATCAGCTGATGATCAGT TGAGATTGACAGAAGCTGAGCAAGACGACAATAACAACAACGAAATCAAGGGTCCTGGACAAGAGAAACCGGACAGGATCTGGTTGCAAGAATCAGCTCC TGATTTCAGACAAGCGAAAACCTTTGAAGATTTCAAAATCGTTACATCGAACGGTTGGATGATCAATGGCGAACTGCCGGAGGACATCAGGTTCGGATAT TACCAACTGTGTTGCAGCCGGAATTCGTTTCTGCACCGGAGCATTCTCAAGGACCTCAACAATAAGCTGGTCGCCGGAATGTTTACGGAAACAGTGCACA TCGCAAATGCGGTAGCGAATTCGGAGGTTGTTACGGTCACGGGCGAAGATTTCAAAACCTGGGGGAGCAAGCTGAAAGCTTTCGGGAAGTTGGGTATGGA AGTGGGGTTTTTACAGGTCCGGTTGAAGGATCTCAAGCGCATTTTCGACAAGGGCGGAAAGTACAAGAAACTGAGAGGGGAGAGGGTTGGTATTGAGGAG AAGGTGGCAGATTTGGAGGCACAACTTGGAGAAGCCAAAGGGAAATTGGAAGAAGTAGATTGTGAGATTGGGAGATTAGGGTTTGATGCAATTGGTGCTG AGCTTGCTTTTGTTGAGTTGGCTAGTGCTCCTTGGTCATCAAGATTCTGA
AA sequence Show only first row Show all	>Lus10019872 pacid=23163986 polypeptide=Lus10019872 locus=Lus10019872.g ID=Lus10019872.BGIv1.0 annot-version=v1.0 MSIDQDQCISQGVLPGRPSLVASPDGRHRKLLPVLLQRRGEDQHATLGNEHQEAAAGGSKNVVPPTRKRRRASMGDLYVNVEAMNNVKNKAEEIRAKLVP DGHPTFVKTMLRSHVTLGFWLGFSREFCDDHLPMVDKDVELEDESGQFWNAKYLAVKQGLSGGWRKFSVDHKLAEGDVVVFHLLRPTKFKVYIVRRNEFE EPNLNLDPTQPSASEANNKCSKRIKAQQSADDQLRLTEAEQDDNNNNEIKGPGQEKPDRIWLQESAPDFRQAKTFEDFKIVTSNGWMINGELPEDIRFGY YQLCCSRNSFLHRSILKDLNNKLVAGMFTETVHIANAVANSEVVTVTGEDFKTWGSKLKAFGKLGMEVGFLQVRLKDLKRIFDKGGKYKKLRGERVGIEE KVADLEAQLGEAKGKLEEVDCEIGRLGFDAIGAELAFVELASAPWSSRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	0	1
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	5.1	0.9796
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	7.6	0.9777
AT3G14880			unknown protein		Lus10013711 [exp]	9.6	0.9770
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	10.5	0.9743
					Lus10038463 [exp]	11.3	0.9746
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	12.4	0.9266
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	13.4	0.9740
AT1G17400			unknown protein		Lus10039921 [exp]	14.5	0.9396
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10010819 [exp]	14.9	0.8578
					Lus10018225 [exp]	15.0	0.9724

Compare expression of checked genes

Lus10019872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.