Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42700 121 / 6e-32 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G19184 114 / 2e-28 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 105 / 2e-25 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 51 / 6e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 48 / 5e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 47 / 2e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G31690 45 / 8e-05 B3 REM9 Transcriptional factor B3 family protein (.1) AT5G18000 43 / 0.0003 B3 VDD VERDANDI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035416 [exp] 238 / 2e-73 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 201 / 8e-59 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 192 / 5e-56 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 192 / 8e-56 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 195 / 9e-56 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 190 / 8e-55 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 166 / 3e-44 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 144 / 2e-38 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10017434 [exp] 134 / 6e-35 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G141800 [exp] 420 / 9e-144 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 417 / 8e-143 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 247 / 2e-76 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 235 / 1e-71 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 234 / 1e-71 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 226 / 5e-69 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 137 / 5e-37 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 132 / 2e-35 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 122 / 7e-32 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 114 / 7e-29 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10019873 pacid=23164043 polypeptide=Lus10019873 locus=Lus10019873.g ID=Lus10019873.BGIv1.0 annot-version=v1.0 ATGGATGCTTCCGACGAACCAGTGTCTCCTCCAGCTCCTTCTCCTTCCGATCAGCTCCCTCTCAACCAGCACATCGCCATGTATCCTCAGTTCAAGGTTA GCAGAAGGAAGTCCCGCGGTTCCAGGATGAAGCCGCACCAGATCCACCCTACCCAATCTCCTGACCATCCTGACTCCAAGTCTCAACTCGTTCTGTATGA TAATTCGCCTGAGTCTAAACGACAAAAGAGAGCTGCTGTCAATGACTTCTACGATAGTGCTGAAACAAAGTCGTCTGCTTTGGAGCGTGCAGAGGACTTT CGAGCAACTTTACCGACTGATATGCCCAGCTTTGCTAAGACATTAGTTCGGTCCAATGTGACTGTTGGGTTTTGGATGCATCTTCCTATGCGGTTTTGCA AATCTCACCTGCCGAAAACTGATACAACCGTCCTTGTTGAGAACGAAATTGGAGCAGAATATGTGATCAATTACATTGCAGATAGGACGGCTTTGAGTGG TGGATGGAAGGCCTTCTGTGGAGCACACAAGCTAAATGAGGGCGATGTTCTCGTCTTCCAAATGGTCAAACCCCTACGGTTTAAGGTGTACGTTGTGAGA GGAAATGGTTCTTCTGGCAAAGTCGAAGAAGATGATTTCGTACAAGATACATCTTCCGGTAGAAAACAAATGATTACTGCCAAGGAGGAAACTGAATATA ACAGAAGTAGGAAGCGCCTAGAGTCACCTCCAGCAAGCCTTTCGAGGGAGAACCAAGAAGAAAATGGCTTGAAATCAAACAGCAACACACATGATCGCTC GGAAAAGAGCCAAGAGGAGGAACCCAGCTCCGAAAACATGGAAATCGTAGCAAGCTCAACAGAACCTGGTCCCGACTTCATGGACATCACTTGCATTGAA GATTTCAGCGTGGTGGTCAACGGAACTGCTATAGACGAAGAGCTTTCCGATCACCACAGGAAGAAGTACTACGAGCTATGCAGCTCCCAGAAGGCGATTC TGCACAGGAATCTCCTCAACAGCATCAGCTGCAAGCTGGCAGCCGAGATCATAAGTGGAACAGTTGACATAGCTGAGTCGATAAGGTCGTCCTCGCTGTC GAGTTCCCACGGGGAGTACGCAGTATGGCAGAAGACCCTGAAAGGGTTCCAGTTTCTGGGGATGAAGGTAGGGTTCCTCTGCGACAGGCTGGAGAAGCTG ATAAGGCTGGCGATGGAATCGGAGGCAGCAGTGGAATCGGAGCGGAGGGAAGTGCAAATGAGGCAAGCTCGAGTGAGCGAGGAAATGGAGATCCTAGAGT TGAAGCTGGCGGAATTGAAAGAGAGGAGGAAAATGCTTGATGAAGAGATAGAGACTCTGAAGGTCACTGCTGAAAAGCATGAAGTTATGTTTCAGGAAGT TGTGAATGCTCCTTGGTGA
AA sequence Show only first row Show all	>Lus10019873 pacid=23164043 polypeptide=Lus10019873 locus=Lus10019873.g ID=Lus10019873.BGIv1.0 annot-version=v1.0 MDASDEPVSPPAPSPSDQLPLNQHIAMYPQFKVSRRKSRGSRMKPHQIHPTQSPDHPDSKSQLVLYDNSPESKRQKRAAVNDFYDSAETKSSALERAEDF RATLPTDMPSFAKTLVRSNVTVGFWMHLPMRFCKSHLPKTDTTVLVENEIGAEYVINYIADRTALSGGWKAFCGAHKLNEGDVLVFQMVKPLRFKVYVVR GNGSSGKVEEDDFVQDTSSGRKQMITAKEETEYNRSRKRLESPPASLSRENQEENGLKSNSNTHDRSEKSQEEEPSSENMEIVASSTEPGPDFMDITCIE DFSVVVNGTAIDEELSDHHRKKYYELCSSQKAILHRNLLNSISCKLAAEIISGTVDIAESIRSSSLSSSHGEYAVWQKTLKGFQFLGMKVGFLCDRLEKL IRLAMESEAAVESERREVQMRQARVSEEMEILELKLAELKERRKMLDEEIETLKVTAEKHEVMFQEVVNAPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10019873 [exp]	0	1
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10040855 [exp]	2.0	0.8728
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	4.2	0.8319
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	6.0	0.8209
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	7.9	0.8200
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	8.8	0.7931
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10005669 [exp]	9.8	0.7549
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10021934 [exp]	11.2	0.8216
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	12.4	0.7903
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	12.6	0.8127
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	14.3	0.8424

Compare expression of checked genes

Lus10019873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.