Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33650 947 / 0 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 901 / 0 DRP3B dynamin related protein (.1.2.3) AT5G42080 236 / 6e-70 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 233 / 6e-67 ADL1B DYNAMIN-like 1B (.1) AT3G60190 231 / 5e-66 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 231 / 7e-66 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 229 / 3e-65 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G60500 137 / 1e-33 DRP4C Dynamin related protein 4C (.1) AT1G60530 115 / 4e-28 DRP4A Dynamin related protein 4A (.1) AT1G53140 44 / 0.0005 DRP5A Dynamin related protein 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014041 [exp] 1414 / 0 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 1172 / 0 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 1075 / 0 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10012076 [exp] 1011 / 0 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027905 [exp] 458 / 1e-145 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10023073 [exp] 240 / 3e-69 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10040117 [exp] 241 / 2e-68 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10003873 [exp] 237 / 3e-68 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 233 / 9e-67 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041800 [exp] 1089 / 0 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.007G118300 [exp] 1089 / 0 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 374 / 3e-124 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3) Potri.003G141000 [exp] 248 / 3e-72 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 244 / 9e-71 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 243 / 1e-70 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.014G043600 [exp] 236 / 1e-67 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 230 / 1e-65 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 230 / 1e-65 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 218 / 2e-61 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10019875 pacid=23163987 polypeptide=Lus10019875 locus=Lus10019875.g ID=Lus10019875.BGIv1.0 annot-version=v1.0 ATGGTCGATCTCGGGACAATGGCCGACGAACCAGCGTCGCAATCCCCGCCCGCGGCGCCGCCGCTTGGATCCTCAGTGATTCCGATGGTGAACAAGCTCC AGGACATCTTCGCCCAGCTCGGGAGCCAGTCCACGATTGACTTGCCGCAGGTGGCGGTGGTCGGCAGCCAGAGCAGCGGCAAATCGAGCGTGCTCGAGGC TCTCGTAGGGAGGGATTTCCTGCCTCGCGGGAACGAGATTTGCACGCGCCGCCCGCTGGTCCTGCAGCTGGTGCAGACCAAGAGGAAGGGAGATGGGAGT GAGGAAGAGTGGGGGGAGTTCCTTCATCGCCCTGATAAGCGGTTCTACGATTTCTCTGAGATCCGCAGAGAAATTGAGGCTGTAACAGCTAAAGAAGCAG GAGATAACAAAGGTGTCTCTGACAAGCAAATCCGTCTGAAGATTTTCTCCCCAACTGTTCTTGATATAACCCTTGTTGATCTTCCGGGGATTACGAAAGT TCCTGTTGGTGATCAACCCACCGACATTGAAGCAAAAATTAGAACTATGATCATGTCATACATAAAAAAGCCAAGCTGTCTGATATTGGCTGTGACTGCT GCCAATGCAGACTTGGCAAACTCAGATGCACTTCAAATTGCAGGAATTGCGGACCCTGATGGTTACAGGACCATTGGTATAATCACAAAGCTGGATATCA TGGATAGAGGTACTGATGCCCGTAATTTGTTACTTGGGAAAGTGATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTTGTCAAGAGGATATTAA TCTCAACCGAACTATTAAGGATGCCCTTGCAGCAGAGGAGAAATTCTTCCGCAGCCATCCTGTGTACAATTCTTTGGCTGACCGCTGTGGTGTTCCTCAG CTTGCAAAGAAGTTGAATCATATTTTAGTGCAACATATTAAAGGGATTCTCCCAGTTCTGAAGTCACGGATAAGTGATACACTGGTTTCCGTTGCAAAGG AGCATGCTAGTTATGGTGAAATCACCGAGTCTAAGGCTGGTCAAGGTGCCTTGCTGCTTACTATCTTTTCAAAATATGGGAAAGCTTTTTCTTCGATGTT AGAGGGAGAAAATGAAGAAACATCAACATCGCAACTGTCTGGTTTAGCGAGAATCAAATATGTCTTCCAGTCAATTTTCGTCAAGAGTTTAGAGGGTGTT GATCCCTGTGAGGATTTGACTGATGATGACATACGAACTGCCATTCAAAATGCTTGTGGTTCTAATGCTGCTTTGTTTGTACCTGTAATTAGCCATCGCT GTCTAGCCAATGAACTTCAGCGCTTCCCAGTTCTGAGAAAACGCATGGATGAAGTCATCGGGAACTTTTTGCGGGATGGTCTTGAACCTTCAGAGACTAT GGTTGGGCATCTTATTGAAATGGAGATGGACTATATAAACACTGCCCATCCAAATTTCATTGGAGGGACCAAGGCTGTGGAAGTTGCGCAGCAGCAACTG AAGTCCTCACGAGTGAACCCTGCAATCTCCAGGCCAAAGGATGTCGCCGAAGTTGATAAAACACCGGCCTCAGAAAGGAGTGTGAAGACTCGAGCTATTC TTGGAAGATCTGTCAACGGAGTACGTCAGGTGGCAAATGCTGAGACCATTGTAACATCTGGATCTGGTCCTGGTAGATCCTCTTGGGGTATTTCGTCAAT TTTTGGAGGAAATAGTAGTTCCCGCTTCTCAACTGAGAAGACAGCTACGAGTATGGAATATATGGATGGAGACTATGGGAGTGATTCTTTGAGCAACAGT ATGTCTGTGATTCATCTGCAAGAGCCGCCAGAAATGCTGAGACCTTCAGATACCCCATCAGAGCAGGAAGCTATTGAAATTGCAGTCATAAAGTTACTGT TGCGGTCCTACTACAACATTGTTCGGAAAAACGTCGAGGATCTAGTGCCAAAAACCATCATGCACTTTCTGGTACAGCATACCAAACGTGAGCTGCACAA TGTGCTGATTAAAAAGCTTTACAGAGAGAACCTATTCGAGGAGATGTTGCAAGAACCCGATGAGATTTCAGTAAAGAGAAAGCAGACACGAGACACTCTC CGGGTCCTTCAACAAGCATTTCGAACGTTGGAAGAACTGCCATTGGAAGCCGAATCGGTGGAGCGGGGACAAAGTTCCGGCTCTGACACAACAGGGCTCC CGAAAATGCGCGGCTTCCCCTTGTCCTCGTCAATCTACGCAACGAGCAACAGCTCCAATGGATTCTACGCAGGTTCGCCGAATAACCAGAAGTCTCGGAA GTCTTCGCACTCGGGTGAACTGCAGTCTCAGTACTACCCCATGGCGGATTCAAATGGAAGGGGAGGAGGTTACATGCCTAGTCTCTATCCGTCAGTTGAT TGA
AA sequence Show only first row Show all	>Lus10019875 pacid=23163987 polypeptide=Lus10019875 locus=Lus10019875.g ID=Lus10019875.BGIv1.0 annot-version=v1.0 MVDLGTMADEPASQSPPAAPPLGSSVIPMVNKLQDIFAQLGSQSTIDLPQVAVVGSQSSGKSSVLEALVGRDFLPRGNEICTRRPLVLQLVQTKRKGDGS EEEWGEFLHRPDKRFYDFSEIRREIEAVTAKEAGDNKGVSDKQIRLKIFSPTVLDITLVDLPGITKVPVGDQPTDIEAKIRTMIMSYIKKPSCLILAVTA ANADLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRCQEDINLNRTIKDALAAEEKFFRSHPVYNSLADRCGVPQ LAKKLNHILVQHIKGILPVLKSRISDTLVSVAKEHASYGEITESKAGQGALLLTIFSKYGKAFSSMLEGENEETSTSQLSGLARIKYVFQSIFVKSLEGV DPCEDLTDDDIRTAIQNACGSNAALFVPVISHRCLANELQRFPVLRKRMDEVIGNFLRDGLEPSETMVGHLIEMEMDYINTAHPNFIGGTKAVEVAQQQL KSSRVNPAISRPKDVAEVDKTPASERSVKTRAILGRSVNGVRQVANAETIVTSGSGPGRSSWGISSIFGGNSSSRFSTEKTATSMEYMDGDYGSDSLSNS MSVIHLQEPPEMLRPSDTPSEQEAIEIAVIKLLLRSYYNIVRKNVEDLVPKTIMHFLVQHTKRELHNVLIKKLYRENLFEEMLQEPDEISVKRKQTRDTL RVLQQAFRTLEELPLEAESVERGQSSGSDTTGLPKMRGFPLSSSIYATSNSSNGFYAGSPNNQKSRKSSHSGELQSQYYPMADSNGRGGGYMPSLYPSVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10019875 [exp]	0	1
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	3.5	0.8957
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	4.7	0.9156
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	5.0	0.8535
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	5.0	0.8839
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10027906 [exp]	6.5	0.8679
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	6.6	0.9050
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	10.0	0.8715
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10040315 [exp]	12.5	0.8867
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	14.5	0.8506
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	16.7	0.8484

Compare expression of checked genes

Lus10019875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.