Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15530 584 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 323 / 1e-101 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 314 / 3e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 306 / 2e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 298 / 2e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 298 / 5e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 293 / 3e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 291 / 2e-89 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 284 / 6e-87 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45420 283 / 2e-86 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014037 [exp] 847 / 0 AT1G15530 807 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 309 / 2e-96 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 306 / 2e-95 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 305 / 7e-95 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 301 / 4e-93 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10029315 [exp] 301 / 5e-93 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 297 / 4e-92 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10004982 [exp] 298 / 5e-92 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 297 / 2e-91 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083300 [exp] 666 / 0 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.012G084900 [exp] 645 / 0 AT1G15530 734 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088801 [exp] 317 / 5e-101 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 318 / 7e-100 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 315 / 9e-99 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 315 / 2e-98 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 312 / 2e-98 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 313 / 7e-98 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 312 / 1e-97 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.003G196600 [exp] 307 / 9e-96 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10019879 pacid=23164075 polypeptide=Lus10019879 locus=Lus10019879.g ID=Lus10019879.BGIv1.0 annot-version=v1.0 ATGCCTCGTCGGCGGCGCCACCACCCGCCACTCATCGTCCTCCTCCTGCTCCTTCAACTCTTCGCATATCCACCACCATGTCTGGGAGTGGATTTCCTCT TCAATTCCTTCAACGCAAGCAGCCCAGGAGTTAGCCTAATCCCCGACGCACGAGTTGACTCTTCCGTCATCCGCCTCACCAACGACACCAACCAGTACTC CCTCGGCCGCGTCTTTTACCCGTCACGGATCCCCATCGTCAGATCATCAAACTCCTCTTCCAACTCCAACTCCACCGTTCTATCCTCCTTCTCTACTTCC TTCGTCTTCTCCGTTTTGCCCGAAATCGCCACCAGCCCTGGCTTCGGCCTCGCCTTTGTCCTCTCCAACTGGACCGACCCTCCCAACGCCCTCGCCAGCC AGTACTTTGGCCTCTTCACTAACGCCACCGTCCCTTTTCAAGCTCCTCTTCTCGCCGTTGAGTTTGACACCGGGCAGAACCCGGAGTTTAATGACCCGGA CGGCAACCACATCGGAATTGATCTCAACAACATTGAATCAGTCAAGACGGAGACCGCTGGCTACTACAATTCTTCGGGTGGCTTCGTTCCCGTGGAGATG AGAACTGGTCAGAACATTCATGCTTGGATCGAATTCGACGGCCCCAGTTTCGAGATCAACGTGACGGTTGCGCCGGTTGGGATTCCTCGCCCTTCCTTGC CCACTCTTACTTACAGAGATCCATCGATTGCCAATTACGTCTCAGCTGAAATGTTTGTCGGATTCTCAGCTTCCAAAACGACTTGGGTTGAGGCACAGAG GATTTTATCCTGGAGTTTCAGTGATACAGGGGAAGCCCGAGATCTCAACACCACGAATCTCCCCGTTTTCCGATTGCCTTCGACGGCTTCAAATTCACTC TCTCCAGGAGCGATTGCAGGTATCACAATTGGATGCGCTGCTTTTGTGGCGGTTTGTGCTCTAGGGTTTTACTGGTTTTGGAGGATGAACAAGAACAAAG GAGAAGAAGAAGAGGAGGAAGAGATTGAAGATTGGGAACACGAGTACTGGCCTCACAGATTCTCATACGACGAACTCACGCAAGCCACCAATCAATTCTC CAAAGATTTGCTGCTAGGTTCAGGAGGATTCGGCAAAGTTTACAAAGGCACGCTGGCAAACGGAACAGAGATAGCGGTGAAATGCGTCAACCACGACTCA AAGCAAGGTCTAAGAGAATTCATGGCGGAGATCTCGAGCATGGGACGTCTTCAACACAAGAACCTAGTCCAAATGCGAGGATGGTGCAGGAAATCCAACG AACTTATGCTCGTGTACGACTACATGCCCAACGGGAGTCTAGATCGCTATATCTTCGCCAAATCAATCAAGCTCCTCAACTGGAAACAGCGGCGGCAGAT CCTAGCCGACGTAGCCGAAGGGCTGAACTACCTCCACCACGGATGGGACCAAGTTGTGATCCACCGCGATATCAAATCCAGCAACATTCTATTGGATTCG GAAATGCGGGGGCGCGATGATACGGTGCTGCTGGACTGGGTGAGGGATTTGTACGCGGAAGGGAGGGTTGTGGAGGCGGCGGACGAGAAGGTGAAAGGAG AATTTGGTTTGGAAGAGATGGAGACTGTGTTGAAGCTTGGATTGGCTTGCTGCCATCCTGATCCTGTAAGGCGGCCCAACATGAAGGAGGTGGCTGCCGT TTTGGTCGGAGAAGATGGCGGAACGACAGAATTGCAGACTGATATTGCCGGCGGCGGTGGTGGTGATAACAATGTGAATACTGAGAACGAGAACGAGTTA GTGCTGCGTGAACATATTGTATGA
AA sequence Show only first row Show all	>Lus10019879 pacid=23164075 polypeptide=Lus10019879 locus=Lus10019879.g ID=Lus10019879.BGIv1.0 annot-version=v1.0 MPRRRRHHPPLIVLLLLLQLFAYPPPCLGVDFLFNSFNASSPGVSLIPDARVDSSVIRLTNDTNQYSLGRVFYPSRIPIVRSSNSSSNSNSTVLSSFSTS FVFSVLPEIATSPGFGLAFVLSNWTDPPNALASQYFGLFTNATVPFQAPLLAVEFDTGQNPEFNDPDGNHIGIDLNNIESVKTETAGYYNSSGGFVPVEM RTGQNIHAWIEFDGPSFEINVTVAPVGIPRPSLPTLTYRDPSIANYVSAEMFVGFSASKTTWVEAQRILSWSFSDTGEARDLNTTNLPVFRLPSTASNSL SPGAIAGITIGCAAFVAVCALGFYWFWRMNKNKGEEEEEEEIEDWEHEYWPHRFSYDELTQATNQFSKDLLLGSGGFGKVYKGTLANGTEIAVKCVNHDS KQGLREFMAEISSMGRLQHKNLVQMRGWCRKSNELMLVYDYMPNGSLDRYIFAKSIKLLNWKQRRQILADVAEGLNYLHHGWDQVVIHRDIKSSNILLDS EMRGRDDTVLLDWVRDLYAEGRVVEAADEKVKGEFGLEEMETVLKLGLACCHPDPVRRPNMKEVAAVLVGEDGGTTELQTDIAGGGGGDNNVNTENENEL VLREHIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	0	1
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10020616 [exp]	1.0	0.9780
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	2.0	0.9731
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	6.0	0.9598
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	7.5	0.9574
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	9.4	0.9508
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	10.1	0.9526
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	11.2	0.9573
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	12.7	0.9575
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	12.8	0.9569
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	13.2	0.9584

Compare expression of checked genes

Lus10019879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.