Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47480 87 / 8e-21 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 80 / 3e-18 alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 80 / 4e-18 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 79 / 4e-18 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 72 / 3e-15 ATCXE13 carboxyesterase 13 (.1) AT1G49650 64 / 2e-12 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 53 / 9e-09 ATCXE5 carboxyesterase 5 (.1) AT1G49640 49 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014036 [exp] 185 / 1e-58 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10019884 [exp] 95 / 3e-24 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 96 / 1e-23 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019882 [exp] 91 / 4e-22 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 81 / 1e-18 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10027909 [exp] 73 / 1e-15 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 72 / 2e-15 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10042662 [exp] 72 / 3e-15 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 71 / 5e-15 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104300 [exp] 103 / 3e-27 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104100 [exp] 95 / 6e-24 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 95 / 7e-24 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 92 / 7e-23 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 92 / 8e-23 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.009G104900 [exp] 91 / 3e-22 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032800 [exp] 87 / 6e-21 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 81 / 2e-18 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G104200 [exp] 79 / 3e-18 AT3G48700 219 / 4e-70 carboxyesterase 13 (.1) Potri.009G105000 [exp] 79 / 4e-18 AT2G03550 234 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019880 pacid=23163979 polypeptide=Lus10019880 locus=Lus10019880.g ID=Lus10019880.BGIv1.0 annot-version=v1.0 ATGGGCCGCCTCCCACGCTGGAGGAGACGGCGCCGAAGAGTGGCTGAACGATCTCGTCGATTTCGGGAAGGTGTACTTGGCCGGAGACAGCGCCGGCGCG AACATCGCTCGCCACGTGGCGATGAGGAACGGGGAGGAGAAGCTGATCGACCAGCTGGGCGTTGTGCTTGCGGGCTGTGGCTGCTGGCGTATCCGGGTTC GACGGCCGGGTTGGACGACCCGGAGATTAACGCGACGGTTGACCCGAATCTGCCGGGTTTGGGTTGCAAGCGGGTGCTGGTTATGGTGGCGGAGAAGGAT ATGTTGAAGGATAGAGGGTGGAGTTATTACGAGACGATGAGGAAGAATGGATGGAAAGGGACGGTGGAGATTGAAGAGACGGAGGGGGAAGGGCATGTTT TCCATTTGTTTAATCCGGCGTTGGAGAGCGCGGCGGAGAGGCTGAAAAGCACCGCTTTGTTCTTGAATCAAGGGAGGGTATGA
AA sequence Show only first row Show all	>Lus10019880 pacid=23163979 polypeptide=Lus10019880 locus=Lus10019880.g ID=Lus10019880.BGIv1.0 annot-version=v1.0 MGRLPRWRRRRRRVAERSRRFREGVLGRRQRRREHRSPRGDEERGGEADRPAGRCACGLWLLAYPGSTAGLDDPEINATVDPNLPGLGCKRVLVMVAEKD MLKDRGWSYYETMRKNGWKGTVEIEETEGEGHVFHLFNPALESAAERLKSTALFLNQGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019880 [exp]	0	1
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	8.4	0.8645
AT4G33690			unknown protein		Lus10040497 [exp]	12.5	0.8841
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	14.1	0.8599
AT1G64385			unknown protein		Lus10033958 [exp]	18.8	0.8647
AT5G03460			unknown protein		Lus10023922 [exp]	45.5	0.8455
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	47.0	0.8526
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	52.3	0.8435
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10029011 [exp]	55.7	0.8052
AT3G62940			Cysteine proteinases superfami...		Lus10040897 [exp]	55.9	0.8313
AT5G64816			unknown protein		Lus10009081 [exp]	61.0	0.8293

Compare expression of checked genes

Lus10019880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.