Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03550 291 / 9e-98 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 290 / 3e-97 ATCXE13 carboxyesterase 13 (.1) AT3G48690 273 / 1e-90 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 265 / 1e-87 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 256 / 3e-83 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 249 / 3e-81 ATCXE5 carboxyesterase 5 (.1) AT1G49640 244 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 136 / 2e-37 ATCXE17 carboxyesterase 17 (.1) AT5G06570 131 / 2e-35 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027909 [exp] 344 / 2e-118 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 338 / 4e-116 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10014035 [exp] 329 / 8e-112 AT2G34480 338 / 2e-117 Ribosomal protein L18ae/LX family protein (.1) Lus10014036 [exp] 326 / 2e-111 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10021745 [exp] 253 / 6e-83 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 246 / 7e-80 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10042662 [exp] 243 / 8e-79 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 242 / 1e-77 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 208 / 5e-66 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104900 [exp] 338 / 2e-115 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 334 / 1e-114 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 334 / 2e-114 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 331 / 2e-113 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 327 / 1e-111 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104400 [exp] 325 / 6e-111 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G103800 [exp] 284 / 5e-95 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.009G105100 [exp] 280 / 1e-93 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032800 [exp] 280 / 2e-93 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142900 [exp] 251 / 4e-82 AT1G19190 276 / 9e-92 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019882 pacid=23163996 polypeptide=Lus10019882 locus=Lus10019882.g ID=Lus10019882.BGIv1.0 annot-version=v1.0 ATGGCCAATTCATCCTCGACCGACCTTGAGATCGAAATCGATCTACTTCCGTTGGTCCGCGTCTACAAAAACGGCACCGTTGAGCGCGTCATGGGCACCG AAACCGTCCCGGCTTCACTGTCCGACCCGGAAACCACTGTCCAATCCAAAGACGTCCCTTACTCACTTGACCCGGAACTCCAAGCCAGGCTCTACCTCCC CAAGGAAACCAAGCCGGGTCTGAAGCTGCCGCTCCTGGTCTACTACCACGGCGGAGGATTCGTGATCGAAACCGCCTTTTCTCCGACGTACCATAACCAT TTGAACATCTTGGTCGCCGATGCCAACGTCGTCGCTGTCTCCGTTGACTACCGGCGCGCGCCGGAGAGTCCTCTTCCGATACCGTATGAGGACTGCTGGG CCGCGCTTAAGTGGGCTGGCTCGCATGCTGGTGGATCGGGCCCGGAGCAGTGGCTTAACGATCATGTGGATTTCGGGTCCGTGTTTCTCGCGGGTGATTC GGCCGGGGCGAATATTGTCCACCACGTGGCTATGAGGTTTGGGCAGGAGGAGATCGCAGGGATTCCGCGATTGAAAGGATTGGTTTTGGTGCACCCGTAT TTTGCTGGAAAAGAATCGGTTGATAAAGAGCCAGTTTTGAATTTGATGGCTGACTGGGGAGAAAAGTTGTGGAAACTGGTGTATCCTAGTACAACGAGCG GATTAGATGACCCGTATATCAACCCAGCGTTCGACCCAAAGCTTAACGAGCTAGGGTGCTCGAAGGTCATGATAATGGTGGCTGGGAAGGATTTTCTAAA AGATAGAGGGAATTATTACTATGAGTTGTTGAAGGGAAGTGAATGGAAAGGTGAAGTTGAGATCGTTGAAACTGATGACGAGGGACATGTTTTTCATTTG AAGGATAATAATTGTGATAACGCCGTAGACATGAGGAAGAAAATATGTTCCTTCATTAATAATTAA
AA sequence Show only first row Show all	>Lus10019882 pacid=23163996 polypeptide=Lus10019882 locus=Lus10019882.g ID=Lus10019882.BGIv1.0 annot-version=v1.0 MANSSSTDLEIEIDLLPLVRVYKNGTVERVMGTETVPASLSDPETTVQSKDVPYSLDPELQARLYLPKETKPGLKLPLLVYYHGGGFVIETAFSPTYHNH LNILVADANVVAVSVDYRRAPESPLPIPYEDCWAALKWAGSHAGGSGPEQWLNDHVDFGSVFLAGDSAGANIVHHVAMRFGQEEIAGIPRLKGLVLVHPY FAGKESVDKEPVLNLMADWGEKLWKLVYPSTTSGLDDPYINPAFDPKLNELGCSKVMIMVAGKDFLKDRGNYYYELLKGSEWKGEVEIVETDDEGHVFHL KDNNCDNAVDMRKKICSFINN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019882 [exp]	0	1
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	2.4	0.8306
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	3.2	0.8243
AT3G27250			unknown protein		Lus10014610 [exp]	3.5	0.8067
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	5.5	0.7505
AT5G64550			loricrin-related (.1)		Lus10019307 [exp]	8.1	0.7766
					Lus10012752 [exp]	8.1	0.7634
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	8.3	0.8232
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	12.0	0.7231
AT2G21990			Protein of unknown function, D...		Lus10035847 [exp]	13.3	0.7413
AT2G22180			hydroxyproline-rich glycoprote...		Lus10016800 [exp]	13.4	0.7212

Compare expression of checked genes

Lus10019882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.