Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39300 45 / 2e-05 unknown protein AT3G55060 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014034 [exp] 316 / 5e-110 AT2G39300 78 / 4e-16 unknown protein Lus10001974 [exp] 69 / 2e-13 AT3G55060 655 / 0.0 unknown protein Lus10030304 [exp] 59 / 6e-10 AT3G55060 595 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047200 [exp] 59 / 7e-10 AT3G55060 637 / 0.0 unknown protein Potri.010G214300 [exp] 58 / 2e-09 AT3G55060 674 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019883 pacid=23163954 polypeptide=Lus10019883 locus=Lus10019883.g ID=Lus10019883.BGIv1.0 annot-version=v1.0 ATGGGATCCGATTCGAAAGAGGAAGTAATTCCAATCTCGGTCGAAGATGATCACGATATTGTCTACGGTGCTGGATCGTTAACCAGCCGAAGTTCCGGCT CAAGTTCAGTTACTTTCGAGGAGGGTTCGGCTAATTCGGGGGCTAGGAAATTGGAAGAAGCTGACGAGAAGCACAGACTGCTCCACGAGAGGGTCAGATA TCTCGCGGAGCAGAATGTCGTACTCCAGAAGGAAGTTTCAGACGCCAAAAGTTCACTGACTTGTTCAGAGCAACAAGTTAGGCAGCTAAGACAAAACTTG TCAGAATTGCAGGACAAGTATAGATCAGCTGAAGAGGAGTTGAGTTGTTTCAGGACCGAATTAGACAATGCTGTAATGACATCAAAGGATAATGCATTAC TGAAAATAGAGCTACAAGCCGAGGAGCTGTTGACAAGTCTGATGAAGAAGAATCTCTACGCTAGAGAAATGAAAGTTCAGCAGTTGCAGGCTGAGATAGC CGGTTTGAATTACCACGCCCGAAAGTCTGAAGATTTCTTGGTGAAGAAGGATGAGATGATGGCGGAGCTTTGGTCGACGAAGGAGATACTGCAGAAAGTA GCAGAGGAGAGGGACATGGTGTGGGAGGAAGTGAACAGGTACAAGGAGATGAACATGGTGATGAAGAAGAAGTTAGAGGAACTTGAAGAAGAAGTTAGAG GAACTTGA
AA sequence Show only first row Show all	>Lus10019883 pacid=23163954 polypeptide=Lus10019883 locus=Lus10019883.g ID=Lus10019883.BGIv1.0 annot-version=v1.0 MGSDSKEEVIPISVEDDHDIVYGAGSLTSRSSGSSSVTFEEGSANSGARKLEEADEKHRLLHERVRYLAEQNVVLQKEVSDAKSSLTCSEQQVRQLRQNL SELQDKYRSAEEELSCFRTELDNAVMTSKDNALLKIELQAEELLTSLMKKNLYAREMKVQQLQAEIAGLNYHARKSEDFLVKKDEMMAELWSTKEILQKV AEERDMVWEEVNRYKEMNMVMKKKLEELEEEVRGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39300			unknown protein		Lus10019883 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10023171 [exp]	7.9	0.8203
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025620 [exp]	8.5	0.8582
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	12.7	0.8523
AT5G37810		NIP4;1, NLM4	NOD26-LIKE MIP 4, NOD26-like i...		Lus10035999 [exp]	14.0	0.7427
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	17.3	0.8498
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	18.2	0.8192
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	19.6	0.8487
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	23.7	0.8333
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	24.9	0.8250
AT3G18060			transducin family protein / WD...		Lus10032444 [exp]	29.8	0.8230

Compare expression of checked genes

Lus10019883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.