Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47480 197 / 4e-62 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 194 / 9e-61 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 184 / 6e-57 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 182 / 5e-56 ATCXE13 carboxyesterase 13 (.1) AT3G48690 177 / 3e-54 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 164 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 157 / 1e-46 ATCXE5 carboxyesterase 5 (.1) AT1G49640 154 / 5e-45 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 107 / 4e-27 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16080 100 / 2e-24 ATCXE17 carboxyesterase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014033 [exp] 406 / 5e-143 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 237 / 2e-77 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10027909 [exp] 224 / 4e-72 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 222 / 2e-71 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 209 / 3e-66 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 206 / 2e-65 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 199 / 2e-62 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 198 / 6e-62 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10034068 [exp] 155 / 1e-44 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104300 [exp] 255 / 1e-84 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.004G142400 [exp] 246 / 4e-81 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 246 / 3e-80 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 241 / 3e-79 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 239 / 4e-78 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G104000 [exp] 239 / 4e-78 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032800 [exp] 225 / 1e-72 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 200 / 4e-63 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032600 [exp] 186 / 1e-57 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142900 [exp] 186 / 2e-57 AT1G19190 276 / 9e-92 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019884 pacid=23164004 polypeptide=Lus10019884 locus=Lus10019884.g ID=Lus10019884.BGIv1.0 annot-version=v1.0 ATGCATGCAGACAAATGGATCGTACTGTACTATACATCGCCACGACGTCGTCGTATATGTTCAGTTATTGGCCACTTTAATTACGTGCTCGGTGCTCCGT CCGGTGAAGTCGATTTCCAGGACCACCCACCGGCCACCATCTCCATGCAAATGTTTCAAGTCCGCCATGTGCTAGCTCCGGAGAATCCGTTGCCCATCGG ATACGACGACTCCTGGTCTTGTCTCCAATGGATTGCGTCTCACTTGAAAGGAGCCGGTCCGGAACCGTGGCTGAACTCGCACGCGGATTTCAGCCGCGTG TTTTTGGCTGGAGACAGCGCCGGAGGAAACATAGCTCACCAGATGGCGATTCGGAACATCGAAGGCAAGGTGTTCGACGAAATGTCTCTAGGAATTGTGT TGATCCATCCATACTTCTGGGGAAAAGATCCGATTGGTGCGGAGCCAGGGGAGGCTGAGAAGAGGAGGACAGCTGATGGAATCTGGTACTTCGCTTGTCC AACGACGAGCGGGTGCGATGACCCGTTTATAAACCCGATTTTCGATCCGAATTTGGAGAAGCTGGGGTGTAGGAAAGTGTTGGTGATTGTGGCGGAGAGG GATGTGCTGAAGGAGAGAGGGAGGAGTTACTACGAGGCGTTGGAGAAGAAGACTGGTTGGAGCGGGCAAATCGAGTATTTCGAGGTTAAGGAAGAGGATC ATGTGTTCCATTTGCAGAACAGTGACTGTGAGAATGCTGCAATCATGAACAGAAAGATCGTCGAGTTCATCAATGGTGGAAAATAA
AA sequence Show only first row Show all	>Lus10019884 pacid=23164004 polypeptide=Lus10019884 locus=Lus10019884.g ID=Lus10019884.BGIv1.0 annot-version=v1.0 MHADKWIVLYYTSPRRRRICSVIGHFNYVLGAPSGEVDFQDHPPATISMQMFQVRHVLAPENPLPIGYDDSWSCLQWIASHLKGAGPEPWLNSHADFSRV FLAGDSAGGNIAHQMAIRNIEGKVFDEMSLGIVLIHPYFWGKDPIGAEPGEAEKRRTADGIWYFACPTTSGCDDPFINPIFDPNLEKLGCRKVLVIVAER DVLKERGRSYYEALEKKTGWSGQIEYFEVKEEDHVFHLQNSDCENAAIMNRKIVEFINGGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019884 [exp]	0	1
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	1.7	0.9456
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	3.2	0.9386
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10025677 [exp]	3.5	0.9324
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	5.0	0.9224
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	10.2	0.9225
AT5G55570			unknown protein		Lus10028870 [exp]	12.2	0.8834
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	12.6	0.8971
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	12.7	0.9136
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	13.4	0.8993
AT1G30260		AGL79	unknown protein		Lus10023289 [exp]	14.2	0.8598

Compare expression of checked genes

Lus10019884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.