Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48690 171 / 9e-52 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 171 / 1e-51 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 169 / 6e-51 ATCXE13 carboxyesterase 13 (.1) AT1G49660 164 / 4e-49 ATCXE5 carboxyesterase 5 (.1) AT1G19190 162 / 2e-48 alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 159 / 1e-46 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 150 / 1e-43 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 143 / 4e-41 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 121 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 116 / 1e-30 ATCXE17 carboxyesterase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014033 [exp] 287 / 3e-96 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019882 [exp] 183 / 2e-56 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 177 / 4e-54 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10012073 [exp] 177 / 4e-54 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10021743 [exp] 176 / 1e-53 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10027909 [exp] 176 / 2e-53 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10014035 [exp] 176 / 6e-53 AT2G34480 338 / 2e-117 Ribosomal protein L18ae/LX family protein (.1) Lus10021745 [exp] 158 / 1e-46 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10002019 [exp] 155 / 2e-45 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105000 [exp] 266 / 6e-89 AT2G03550 234 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G143200 [exp] 238 / 1e-77 AT1G47480 235 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G143100 [exp] 209 / 2e-67 AT1G49660 235 / 1e-76 carboxyesterase 5 (.1) Potri.009G105100 [exp] 210 / 3e-67 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 205 / 2e-64 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104600 [exp] 191 / 6e-60 AT1G19190 219 / 1e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 188 / 1e-58 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.009G104100 [exp] 183 / 2e-56 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 182 / 2e-56 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.014G032600 [exp] 182 / 6e-56 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019885 pacid=23164053 polypeptide=Lus10019885 locus=Lus10019885.g ID=Lus10019885.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCCGATGAGATCGAACGAGATTTCCCTGGCTTCTTCAAGGTCTACAAGGACGGCCGCGTCGAGCGGTATTGGGACACCGGCGACCACATCC CCGCCGCCCTCGACCCGGAAACCGGCGTCGAGACCAAGGACGTCGTCATCTCCCCGGATACCGGCGTCAAAGCCCGTATCTTCCTCCCCAAAATCGTCGA CGGCGCCGGGAAGCTCCCCGTAATCCTCCACTTCCACGGCGGCGGATTCTGCATCGGGTCTCCATTTTCGGCTCCGTTTAAAGTGTTTCTCTCGGCCTTG GCCGCCCAGACGAACTCCATCACGATCTCGATCGACTACCGTCTGGCGCCGGAGCACAAGCTCCCGATCGCGTTCGACGACTGCTGGGAAGGGTTCAAGT GGGCGGCGCTCCACGCCGGCGGGTCGGGGCCCGAGCCGTGGATGAACCGCTACGCGGATCTGGGCCGGGTCGTGCTGGCGGGTGAGAGCGCGGGGTCCAC GCTGGCGCATTACGTGGCGGTCCAGGCTGGCGCGAGGGGATTGGACGGGAAGGATGGGGTGAGGGTGACTCGGATGGTTTTGGTTCATCCTTATTTCGGG GCGGAGCAACCCGACGTGTTTATCCAGGTGAGAGAGAGAGGGGGGAGATGGGGGGCAAGAAGAGCGGCGGCGCGTGGAGTGGGAGCGTGGAGTATTACGA GACGAAAGGGGAGGATCATTGTTTCCATTTTTTTAATCCGAAAAGTGAGAATATTGCGCCACTCATGA
AA sequence Show only first row Show all	>Lus10019885 pacid=23164053 polypeptide=Lus10019885 locus=Lus10019885.g ID=Lus10019885.BGIv1.0 annot-version=v1.0 MAPSDEIERDFPGFFKVYKDGRVERYWDTGDHIPAALDPETGVETKDVVISPDTGVKARIFLPKIVDGAGKLPVILHFHGGGFCIGSPFSAPFKVFLSAL AAQTNSITISIDYRLAPEHKLPIAFDDCWEGFKWAALHAGGSGPEPWMNRYADLGRVVLAGESAGSTLAHYVAVQAGARGLDGKDGVRVTRMVLVHPYFG AEQPDVFIQVRERGGRWGARRAAARGVGAWSITRRKGRIIVSIFLIRKVRILRHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	0	1
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	1.0	0.9861
					Lus10004651 [exp]	1.7	0.9858
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	3.2	0.9861
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10008112 [exp]	4.0	0.9775
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	4.0	0.9856
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10024599 [exp]	4.7	0.9676
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	6.3	0.9812
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	7.5	0.9783
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10009428 [exp]	7.5	0.9657
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	8.4	0.9762

Compare expression of checked genes

Lus10019885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.