Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04700 342 / 6e-107 Ankyrin repeat family protein (.1) AT5G04680 336 / 4e-104 Ankyrin repeat family protein (.1) AT5G04730 303 / 6e-93 Ankyrin-repeat containing protein (.1) AT3G18670 301 / 3e-92 Ankyrin repeat family protein (.1) AT5G04690 272 / 6e-81 Ankyrin repeat family protein (.1) AT5G35810 221 / 4e-65 Ankyrin repeat family protein (.1) AT3G54070 194 / 4e-53 Ankyrin repeat family protein (.1) AT3G12360 71 / 1e-12 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 69 / 9e-12 Ankyrin repeat family protein (.1) AT4G03500 64 / 4e-10 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014030 [exp] 849 / 0 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10027721 [exp] 437 / 6e-144 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10019888 [exp] 418 / 1e-135 AT3G18670 116 / 2e-40 Ankyrin repeat family protein (.1) Lus10038357 [exp] 347 / 4e-108 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10035567 [exp] 255 / 2e-76 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014031 [exp] 218 / 3e-67 ND 146 / 2e-42 Lus10014701 [exp] 222 / 4e-62 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10014032 [exp] 196 / 7e-58 AT5G04730 54 / 1e-08 Ankyrin-repeat containing protein (.1) Lus10000489 [exp] 200 / 1e-55 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G022900 [exp] 629 / 0 AT3G18670 399 / 4e-130 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 607 / 0 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.008G023101 [exp] 598 / 0 AT5G04700 380 / 9e-122 Ankyrin repeat family protein (.1) Potri.008G023700 [exp] 533 / 0 AT5G04700 371 / 8e-120 Ankyrin repeat family protein (.1) Potri.008G023400 [exp] 499 / 3e-170 AT5G04700 336 / 8e-109 Ankyrin repeat family protein (.1) Potri.005G057900 [exp] 449 / 2e-148 AT3G18670 431 / 4e-144 Ankyrin repeat family protein (.1) Potri.007G110000 [exp] 439 / 4e-144 AT3G18670 404 / 2e-133 Ankyrin repeat family protein (.1) Potri.015G125000 [exp] 390 / 6e-124 AT3G18670 395 / 5e-128 Ankyrin repeat family protein (.1) Potri.006G062900 [exp] 247 / 6e-72 AT3G18670 280 / 4e-86 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 246 / 6e-71 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019887 pacid=23164041 polypeptide=Lus10019887 locus=Lus10019887.g ID=Lus10019887.BGIv1.0 annot-version=v1.0 ATGGCGACACACGTCTACACTATCCCGACGAGGGAGGCTCTTCAATCCGTAGGTGACAAACACTACGACAACTGGACCACTTGCCTCACTTCCTACCTCG TCTCTCAAGACCTCTGGGACTTGATCCATTCATCATCCCAAACTACCAGCCAAGAATCCCAAGTCAATGGAGAGACTGACGTTGCTCCTACAGCTATTAC TGCCGCCTCCTCCGGGGAAGAATCCCCAGTCAATCGAGAGATGGATGCTACTCCTACGACTACTATCACCATCGCCGGGGAAGAATCCCAAGTCAACGCA GAGATGGATGCTACTTCTACAACTACTACTATTACTCCCGCCGCCGCAAGTCCAGCTTGGCGGAGGAGAAATGCGGCGGCGCTTCACGCGATTCATATAT CGTTGAGCTCCGACTTACTCCATCAGATCCGGGAAATCGCTTCTGCCAAGGAGGCTTGGGACACTCTCGCTGATATGCACCGCAAGAAGCTCCCTCCCAA AGACGAGTCTCTCGGAGCTTCTGGAGCTGATCAGCAAGTTAACACCGGAGCCGAGAACATTGCATCCCGATATTTCCCCCTCATTGTACGAGTACGAGAA GGAGACGCGCAAGGCGTACGCAACTTTGTGAGGGAGAATCATGAATCGGTGAGATTTCAGTTCCCGCCGGGACAGAGCACAGCGCTCCACCTGGCGGCGA GTCTGGGGAACACAGAGATAGCGGAGGAGTTGTTAGAGGTGATGGAGGATGAGGATCTGGAAATCCAGGACCGCGGAGGGAGCACGGCGCTTCACATTGC AGCGGCGAACGGTCACCGCAGACTGGTGGAGCGGATGTTAGAGAAGAACTCCAACTTGGTGAAGATCGTGAACAAAAGAAATGTGATTCCGCTAAGAGAG GCTTGCGGGAAGAACCACAAGGAACTCGCTACTTTGCTCTACGGCTGTACGCCTTTCTATTGGATGTGTGAAGAGAATGATGGCAAGTATGGAGCTAGCA TTCTCAAATGTTGCATCCTCGCCCAAATGTTTGACATTGCCTTGGATGTTTTAAGGCGTCACCCGAGGATGGCTACGACGAAGGACACCGGCAAAATCAA CGTGGTTATTCAGTTGTCATCTATGCCCACTGCATTTCTTAGCGGAAGCAAGCTTTCCATTTGGTTGCGATGGATATATGCATTAATACACCTAAGAATA CCAGGTCCTCTGCACCCAACCACAGTACACCAAGGTTCTTCAGACGAAGAATTAAATTTCGGAGCAGAGCATGATGATATTATAAACGTTGATAAACTTA GAAGAATCAAACATGACGGGGCTCATCAAGGACAAAATTATTGGGATAAACTTCTTTCCGTCATTTTGAAACTCACGGGAACTAAGCACATATACGACTT GAAAAGGGTCCATATATGCTCCCTAGAGCTCTTAAACTTGGCATTTAAACAAGTCTCGAGGTCGGATTTCAGGAAGCTGGAAGAGATGGGAGTTCACGAA GCGTTCCACAAGGCCATAAAGAACGGAATAGTTGAATTCGTGATGAGGGCGGTCAAGGCCTGCCCTGCATTGTTGTACAGATTCGACAAGGACAGTCGAA ACATGTTCATGTCAGCGGTGGAGTTCAGGCAGGAGAAGATCTTCAACCTATTGTACCCTTTACCGGACAGGGCAACTATAGTGTCGTTGGTGGACAATGA CAGGAACACGATGCTGCATTTGGCTGGGATGTTGTCTCCTGATGCCAAGCTGTCCCACATCTCTGGTGCTGCTCTCCAAATGCAAAGAGAACTCCAGTGG TTTCTGGAAGTGGAAAGGGTCATGAACCCAATGTACAAAGACAACACAAACAGCAACAACGAAACAGCAAGACAAATATTCACAAGAACCCACAAGGACC TGGCCTCCGCAGGAGAGAAGTGGATGAAAGAAACCGCCACCTCATCCACCGTCGTCGGAGCTCTCATAATCACGATCATGTTCACGGCTGCATTCACCGT TCCAGGAGGGAACAACCAGGAAACCGGCATCCCAATTCTCCTCCATGAAAAGGCCTTCAAGATCTTCATAGTATCCGACTCCATTTCCCTCTTTGCCGCC TCTACCTCAGTACTTATGTTCTTGAGCATTCTCACATCAAGATATGCAGAGGCCGACTTCCTTTCATCACTGCCGACCAAGCTGGTGATTGGACTGTCCA CACTTTTTATTTCGATTGCAGCCATGATGGTTACGTTCTGCGCCACAGTTATGATCGTTATGGACGGACGATTGGAATATGTGGTCCCAATTATACTCAT GGCGAGCGTTCCGGTTAGCTTGTTTATGTTGTTGCAGTTTCCTCTGTTGGTTCAGATTTTCAGGTCGACTTACGGGTCCGGGATCTTCCATCGGAATACG AAGCCTTGGCTTTGA
AA sequence Show only first row Show all	>Lus10019887 pacid=23164041 polypeptide=Lus10019887 locus=Lus10019887.g ID=Lus10019887.BGIv1.0 annot-version=v1.0 MATHVYTIPTREALQSVGDKHYDNWTTCLTSYLVSQDLWDLIHSSSQTTSQESQVNGETDVAPTAITAASSGEESPVNREMDATPTTTITIAGEESQVNA EMDATSTTTTITPAAASPAWRRRNAAALHAIHISLSSDLLHQIREIASAKEAWDTLADMHRKKLPPKDESLGASGADQQVNTGAENIASRYFPLIVRVRE GDAQGVRNFVRENHESVRFQFPPGQSTALHLAASLGNTEIAEELLEVMEDEDLEIQDRGGSTALHIAAANGHRRLVERMLEKNSNLVKIVNKRNVIPLRE ACGKNHKELATLLYGCTPFYWMCEENDGKYGASILKCCILAQMFDIALDVLRRHPRMATTKDTGKINVVIQLSSMPTAFLSGSKLSIWLRWIYALIHLRI PGPLHPTTVHQGSSDEELNFGAEHDDIINVDKLRRIKHDGAHQGQNYWDKLLSVILKLTGTKHIYDLKRVHICSLELLNLAFKQVSRSDFRKLEEMGVHE AFHKAIKNGIVEFVMRAVKACPALLYRFDKDSRNMFMSAVEFRQEKIFNLLYPLPDRATIVSLVDNDRNTMLHLAGMLSPDAKLSHISGAALQMQRELQW FLEVERVMNPMYKDNTNSNNETARQIFTRTHKDLASAGEKWMKETATSSTVVGALIITIMFTAAFTVPGGNNQETGIPILLHEKAFKIFIVSDSISLFAA STSVLMFLSILTSRYAEADFLSSLPTKLVIGLSTLFISIAAMMVTFCATVMIVMDGRLEYVVPIILMASVPVSLFMLLQFPLLVQIFRSTYGSGIFHRNT KPWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04700			Ankyrin repeat family protein ...		Lus10019887 [exp]	0	1
AT4G11860			Protein of unknown function (D...		Lus10006717 [exp]	6.3	0.8457
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	6.5	0.8844
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	6.9	0.8941
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10001145 [exp]	8.5	0.8435
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	10.7	0.8617
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	10.8	0.8706
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	19.7	0.8346
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	21.6	0.8510
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	22.6	0.8609
AT4G15080			DHHC-type zinc finger family p...		Lus10039043 [exp]	26.9	0.8761

Compare expression of checked genes

Lus10019887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.