Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04700 122 / 1e-28 Ankyrin repeat family protein (.1) AT5G04690 106 / 9e-24 Ankyrin repeat family protein (.1) AT5G04730 100 / 5e-22 Ankyrin-repeat containing protein (.1) AT5G04680 95 / 4e-20 Ankyrin repeat family protein (.1) AT3G18670 92 / 3e-19 Ankyrin repeat family protein (.1) AT5G60070 54 / 2e-07 ankyrin repeat family protein (.1) AT1G07710 54 / 3e-07 Ankyrin repeat family protein (.1) AT3G54070 54 / 4e-07 Ankyrin repeat family protein (.1) AT5G35830 51 / 9e-07 Ankyrin repeat family protein (.1) AT2G03430 50 / 2e-06 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014030 [exp] 759 / 0 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10019887 [exp] 447 / 1e-146 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10027721 [exp] 168 / 4e-44 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10038357 [exp] 106 / 1e-23 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10014032 [exp] 77 / 1e-15 AT5G04730 54 / 1e-08 Ankyrin-repeat containing protein (.1) Lus10035567 [exp] 74 / 1e-13 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10016672 [exp] 71 / 2e-12 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10003282 [exp] 71 / 2e-12 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10000489 [exp] 68 / 1e-11 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G022900 [exp] 253 / 1e-73 AT3G18670 399 / 4e-130 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 242 / 1e-69 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.008G023700 [exp] 231 / 2e-66 AT5G04700 371 / 8e-120 Ankyrin repeat family protein (.1) Potri.008G023101 [exp] 231 / 1e-65 AT5G04700 380 / 9e-122 Ankyrin repeat family protein (.1) Potri.005G057900 [exp] 182 / 6e-49 AT3G18670 431 / 4e-144 Ankyrin repeat family protein (.1) Potri.007G110000 [exp] 176 / 1e-46 AT3G18670 404 / 2e-133 Ankyrin repeat family protein (.1) Potri.008G023400 [exp] 169 / 2e-45 AT5G04700 336 / 8e-109 Ankyrin repeat family protein (.1) Potri.015G125000 [exp] 136 / 3e-33 AT3G18670 395 / 5e-128 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 86 / 3e-17 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1) Potri.006G062900 [exp] 82 / 7e-16 AT3G18670 280 / 4e-86 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019888 pacid=23163961 polypeptide=Lus10019888 locus=Lus10019888.g ID=Lus10019888.BGIv1.0 annot-version=v1.0 ATGGAATTATTTATTTACAAATATGATGAATTAATATGGCTGGAAGCAGGAACGACAACTAACAGAGACAGAGCATCTCAGTATTCCTACCTAATCACTA CGGTAAGGGAAGGACGAGACACAAAAGGCATCAGCAACTTCATCGGCTCGAATCCCGAATCGGTAAGATTCCGGTTCGAGCCGGGACAAGGAACAGCGCT TCATCTGGCGGCTGCGTTGGGGAATGCAGAGGTAGTGGAGGAGCTGATGTCATGGATGGATGAGGAAGACCTCGAAATCCAAGACAACGACGGAAGCCCT GCCCTACACATTGCCGCGTCGAGAGGCCTCCTCAGGGTGGCCGAGCTCATGGTTCGTGAGGACTCGAGCTGGGTGACAATTATGAACAATAGGGACAAGA TACCGTTGCGAGAGGCTTGTGAGAAAAACCACAAGGAACTCGCCACTTTCCTTTACCGCACCACTCCTACTATTTTCCTTTGTGACGAGGACGACGGGAA GTATGGGGCTAATATCCTCAATTGCTCCATCCTCGGCCTAATGTTTAGTATCGTGCCAAAATTTTCCAAATCACATATTGCGCTTGATTTGTCGAGGCGT AGGAAAGGTATGGCTATGGTGATGGATGCTACCAAAGTCAACGTCGCGATTCAATTGTCCACTATGCCCGACACATTCCCTAGCGGACGCCCGGTCATCT TTTGGATGGGATGGATATATTCATGCTCCGTGACGGATTCATCGGAATGCGATGATGGATTCGGACTGATGACTTCACCGGACGGGGATGATATCATCAA AGATGTCGATAAATACTGGAAATCCAAACATGGCAGGATACTAGAACATAACTGGTCCAGTAAACTGCATTCCTTCATTTTCAAAGTTACAGGAACCGAG CAAATGTATGAACTGAAAACAGTCCACATATGCTCCCTAGAACTATTAAACCTGACGTTCCAGCAGATCTCAAGGTCAGATTTCAGGAAGTTTGGAGAGA TGGGAGTGTACGAAACATTCGACAACGCGGTAAAGAACGGGATAGTGCAATTCGTGAAACGGGCGATGGAGGTTTGCCCTGCTCTGTTGCGGAGACTGGA CAAGAAGGGTAGAAATGTGTTGATGTTGGCCGTCGAGTTTCGACAAGAGAAGGTGTTCAACATGTTGTTATCATCTCTGCCGGATGTGGCAACTACAGCG TCGCTGGCGGATAAGGACGGGAACACAGTGCTGCATTTGGCTGGGATGATGTCTTGTGATGATGCTAAGCTTTCACGTATCTCCGGTGCTGCTCTTCAAA TGCAAAGAGAACTTCATTGGTTCCTGCGTAAAGTACCCAATCAACGGCATCCATCCCCGTTCTCGTTGTTCCCGACGATGAGAACGGTGACAACGAACAT GGGGTTACGGTTTGTCAGAAAATGGAAAAATGGTGTTGCTTTCGGTTCCGGAAGTTTCCTAACCACGAAAACAATATCCGTTCGGGAGGTTCTTCAGGAT CATGATTTTATCATAGCGATCACTAATTTGTTTGATGCAGGAAGTGGAGAGGGTCACAAACCCAATGTACAAACGCAAGAAAAACAACAACAACGAAACA GCCAGACAAACATTCACAAGAAACCACAAGGGCATAGCTTCATCGGGAGAAAAATGGATGAAGGAGACCGCCACGTCAGCCACGGTCGTCGGAGCTCTCA TCATCACGATCATGTTCACAGCTGTGTTCACCGTTCCGGGCGGGAACAACTAGGAGACCGGCATCCCCATTCTACTCAACCAATGAGCCTTCAGAATCTT CGTGGTGTCCGACTCGATTTCGCAGTTTGCTGCCTCGACGTCGGTGCTGATGTTCCTCGCCGTCCTGACGTCGCGCTATTCTCGATCGCGACCATGATGG TGGCGTTCTGTGCCGCGATTGTGATGGTTATGGATCGGCGGTGGGAATTCGTGGTTCCGATTATGCTGGTGGCGGCTGTTCCGGTCAGTTTGTTTATGTT GTTGCGGTTTCCTTTGCTTGTTGAGATTTTCTTCTCGACTTATGGGTTTGGGATCTTCAAGAGGAATACAAAGCCGTGGCTTTAA
AA sequence Show only first row Show all	>Lus10019888 pacid=23163961 polypeptide=Lus10019888 locus=Lus10019888.g ID=Lus10019888.BGIv1.0 annot-version=v1.0 MELFIYKYDELIWLEAGTTTNRDRASQYSYLITTVREGRDTKGISNFIGSNPESVRFRFEPGQGTALHLAAALGNAEVVEELMSWMDEEDLEIQDNDGSP ALHIAASRGLLRVAELMVREDSSWVTIMNNRDKIPLREACEKNHKELATFLYRTTPTIFLCDEDDGKYGANILNCSILGLMFSIVPKFSKSHIALDLSRR RKGMAMVMDATKVNVAIQLSTMPDTFPSGRPVIFWMGWIYSCSVTDSSECDDGFGLMTSPDGDDIIKDVDKYWKSKHGRILEHNWSSKLHSFIFKVTGTE QMYELKTVHICSLELLNLTFQQISRSDFRKFGEMGVYETFDNAVKNGIVQFVKRAMEVCPALLRRLDKKGRNVLMLAVEFRQEKVFNMLLSSLPDVATTA SLADKDGNTVLHLAGMMSCDDAKLSRISGAALQMQRELHWFLRKVPNQRHPSPFSLFPTMRTVTTNMGLRFVRKWKNGVAFGSGSFLTTKTISVREVLQD HDFIIAITNLFDAGSGEGHKPNVQTQEKQQQRNSQTNIHKKPQGHSFIGRKMDEGDRHVSHGRRSSHHHDHVHSCVHRSGREQLGDRHPHSTQPMSLQNL RGVRLDFAVCCLDVGADVPRRPDVALFSIATMMVAFCAAIVMVMDRRWEFVVPIMLVAAVPVSLFMLLRFPLLVEIFFSTYGFGIFKRNTKPWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	0	1
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	1.4	0.8489
					Lus10016424 [exp]	3.2	0.8689
AT1G05577			Domain of unknown function (DU...		Lus10037468 [exp]	8.3	0.7403
AT3G18670			Ankyrin repeat family protein ...		Lus10014030 [exp]	12.0	0.8086
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	12.8	0.7668
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	15.7	0.7683
					Lus10025850 [exp]	15.9	0.7447
AT4G11170			Disease resistance protein (TI...		Lus10006732 [exp]	16.9	0.7822
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	18.9	0.7810
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	20.7	0.7554

Compare expression of checked genes

Lus10019888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.