Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19130 392 / 8e-136 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 382 / 9e-132 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 350 / 2e-119 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 345 / 3e-117 ATRBP47C RNA-binding protein 47C (.1.2) AT4G27000 311 / 3e-104 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 310 / 6e-104 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 307 / 1e-102 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 303 / 3e-101 ATRBP45A RNA-binding protein 45A (.1) AT3G14100 126 / 8e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 125 / 1e-32 UBP1A oligouridylate-binding protein 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014029 [exp] 506 / 0 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10012071 [exp] 441 / 1e-156 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 441 / 1e-155 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10027911 [exp] 408 / 6e-144 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10021754 [exp] 378 / 5e-130 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10031844 [exp] 330 / 1e-111 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 328 / 6e-111 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 320 / 7e-108 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 229 / 1e-71 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105300 [exp] 436 / 6e-153 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 435 / 2e-152 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 391 / 3e-135 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 382 / 6e-132 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 337 / 3e-114 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G017200 [exp] 328 / 7e-111 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G423400 [exp] 321 / 6e-108 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 319 / 2e-107 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 121 / 4e-31 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 119 / 2e-30 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10019889 pacid=23164012 polypeptide=Lus10019889 locus=Lus10019889.g ID=Lus10019889.BGIv1.0 annot-version=v1.0 ATGGACGAGACTTACGTCCACAGCTGCTTTTCTCACACTGGCGAGGTCTCTTCTGTTAAGGTGATACGGAACAAGCAAACTGGTCAGTCAGAAGGGTATG GTTTTGTCGAGTTCTACTCACACGCTACAGCAGAGAAAGTCCTACAAACCTACAATGGCTGTGCCATGCCAAATTCAGATCAGCCGTTCCGTCTGAACTG GGCAAGCTTTGCTGGTGACAGACGAGCTGAACCAAATTCTGATCTGTCAATATTTGTCGGAGATTTGGCAGCAGATGTGACTGATTCTATGTTGCAGGAG ACATTCTCCAGCAAATATGCATCCGTTAAAGGAGCAAAAGTAGTTATTGATTCCAATACTGGAAGGTCGAAAGGTTATGGTTTTGTTAGGTTCAGCGATG AGGGTGAGAGGTCTAGAGCCATGGTGGAGATGAACGGCGTTTATTGTTCTTCGAGGCCCATGCGAATAGGTGTTGCGACTCCCAAAAAGGCTTCTCCATA TCAGCAACAATATGCTTCACAAGCTATGGTTTTGGCTGGTGGTGGACATGGATCAAATGGCTCTTCTGCACAGGGTGCTCATGGTGATGGCGAGTCTACT AACACGACTATATTCGTTGGAGGAATTGACTCTGATGTTAGTGAGGAAGATCTCAGGCAGCCATTTAGCCAGTTTGGTGATGTTGTGTCGGGGGAAATAA ATGTAGGGAAAGGCTGCGGATTTGTGCAATTTGCCAGCAGAAAAAGTGCCGAAGAAGCACTTGACGGTTTGAATGGCACTGTCATTGGCAAGCAGACAGT TAGACTTTCATGGGGTCGCAGTCCTGCAAACAAGCAGTGGAGAGGGGATAATGGAAACCAGTGGAATGGAGGTGGCTACAATGGCGGACAAGGCTACGGT GGTGGGTATGGATACAACGCATCATCTAACCAGGATGCAGGCATGTACGCTGCAGCTGCAACCAATGGAGCTTCGTAG
AA sequence Show only first row Show all	>Lus10019889 pacid=23164012 polypeptide=Lus10019889 locus=Lus10019889.g ID=Lus10019889.BGIv1.0 annot-version=v1.0 MDETYVHSCFSHTGEVSSVKVIRNKQTGQSEGYGFVEFYSHATAEKVLQTYNGCAMPNSDQPFRLNWASFAGDRRAEPNSDLSIFVGDLAADVTDSMLQE TFSSKYASVKGAKVVIDSNTGRSKGYGFVRFSDEGERSRAMVEMNGVYCSSRPMRIGVATPKKASPYQQQYASQAMVLAGGGHGSNGSSAQGAHGDGEST NTTIFVGGIDSDVSEEDLRQPFSQFGDVVSGEINVGKGCGFVQFASRKSAEEALDGLNGTVIGKQTVRLSWGRSPANKQWRGDNGNQWNGGGYNGGQGYG GGYGYNASSNQDAGMYAAAATNGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	0	1
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	1.0	0.9655
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	2.0	0.9372
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	2.6	0.9276
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	5.7	0.9359
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	6.3	0.9340
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	7.1	0.9195
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	10.8	0.8946
AT5G13070			MSF1-like family protein (.1)		Lus10031261 [exp]	11.0	0.8807
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	11.2	0.9299
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	12.4	0.9201

Compare expression of checked genes

Lus10019889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.